Fuzzy individuals

Nature Alive

I have an interest with the philosophy of biology, but I’m a dilettante. My background is in evolutionary biology; I haven’t had a philosophy class since I was an undergrad at UCF. Nevertheless, if you study the so-called Major Transitions, you’re inevitably going to end up reading some philosophy. Topics such as multilevel selection, emergence, and the nature of biological individuality come up over and over again in this field, and philosophers of biology have made important contributions in all of them.

Among these, I find discussions of the nature of biological individuality fascinating, and I’ve written about it often here. Volvox and its relatives often come up in these discussions, and they have for a long time. A new edited volume, Nature Alive, continues this trend in a chapter by Lukasz Lamza (“Cells, organisms, colonies, communities–the fuzziness of individuality in modern biology”).

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Origins of the sexes: more on MID

Last week, I wrote about Takashi Hamaji’s new paper characterizing the mating-type/sex-determining loci in Eudorina and Yamagishiella. That paper showed that the sex-determining region of anisogamous Eudorina is, surprisingly, considerably smaller than the mating-type loci of isogamous Chlamydomonas, Gonium, or Yamagishiella. Because only one gene, MID, is present in the male version of the sex-determining region in Eudorina, Hamaji and colleagues concluded that

…the evolution of males in volvocine algae might have resulted from altered function of the sex-determining protein MID or its target genes.

I commented that

…we’re still left with two (non-mutually exclusive) possibilities: changes to the MID gene itself may have changed which genes it interacts with (or how it interacts), or there may have been changes in the genes whose expression is controlled by MID.

Now Sa Geng and colleagues have provided at least a partial answer. In a new paper in Development, they swapped versions of MID among different volvocine species* (unfortunately, no unpaywalled version of the paper is currently available; I will add a link when I find one). We already knew that MID is necessary and sufficient for male development: genetically male Volvox carteri colonies that have MID expression turned off produce eggs, and genetically female colonies transformed with MID produce sperm packets (“Sex change (in Volvox)”). But that’s MID from the same species. It’s somewhat surprising that a single gene can cause Volvox to switch sexes, but at least Volvox MID evolved side-by-side with the genes whose expression it controls.

What would be really surprising is if MID from other species, species that diverged from the Volvox lineage ~200 million years ago, worked in Volvox. It would be extraordinarily surprising if MID from a species that doesn’t even have males  could control their development in Volvox. It won’t work. Waste of time; don’t bother trying.

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Cells, colonies, and clones: individuality in the volvocine algae

Biological Individuality

As I mentioned previously, I have a chapter in the newly published book Biological Individuality, Integrating Scientific, Philosophical, and Historical Perspectives. The chapter was actually written nearly five years ago, but things move more slowly in the philosophy world than that of biology. Finally, though, both the print and electronic versions are now available; here is the electronic version of my chapter. The book currently has no reviews on Amazon, so if you want to give it a read, yours could be the first. If you’re interested in current and historical views on individuality, there is a lot of good stuff in here, including contributions by Scott Lidgard & Lynn Nyhart, Beckett Sterner, Andrew Reynolds, Snait Gissis, Olivier Rieppel, Michael Osborne, Hannah Landecker, Ingo Brigandt, James Elwick, Scott Gilbert, and Alan Love & Ingo Brigandt.

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Volvox 2017: David Kirk will be there

David Kirk

Dr. David Kirk, Professor Emeritus at Washington University in St. Louis.

I just found out from Jim Umen, who’s organizing the Fourth International Volvox Conference, that David Kirk is planning to attend. This is great news; we’ve been wanting Dr. Kirk to come since the first meeting in 2011, but it hasn’t previously worked out.

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J. S. Huxley part 1: Gonium

Julian Huxley was one of the biologists responsible for the merging of Mendelian genetics and Darwinian evolution in the early 20th century, the modern synthesis. His most influential work was Evolution: The Modern Synthesis, published in 1942. Thirty years earlier, though, he published a book on biological individuality, The Individual in the Animal Kingdom. Thankfully, the copyright on this book has expired, so it is now part of the public domain, and a scanned version is available for free in pdf and epub versions from Google.

Huxley Cover

Any book with Volvox on the cover can’t be all bad!

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Volvox live wallpaper for Android

Anybody remember iGoogle? Kind of a customizable home page for your web browser. I used it until they shut it down, and I even spent a few hours designing a Volvox iGoogle theme (when I should have been writing my thesis):

igoogle

I think three or four people used it; Google would only tell me “less than 100.” Nevertheless, if you feel the need for some Volvox in your life but you don’t have a handy supply of AF-6 medium, lighted incubator, and dissecting scope, there’s still a way:

We have a good news for all VOLVOX fans. You can grow VOLVOX on your smartphone!

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Multicellularity rundown

Too many papers, not enough time: each of these deserves a deep dive, but my list just keeps getting longer, so I’m going to have to settle for a quick survey instead. To give you an idea of what I’m up against, these papers were all published (or posted to bioRxiv) in July and August, 2016. By the time I could possibly write full-length posts about them all, there would probably be ten more!

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Volvox 2015: development

Replica of Antonie van Leeuwenhoek's microscope.

Ray Goldstein‘s working (!) replica of Antonie van Leeuwenhoek’s microscope.

At the start of the Development session, I asked for a show of hands of people who self-identify as developmental biologists. About four went up. That’s not quite fair, since there’s some ambiguity in the question (primarily? exclusively?), but my point was that what all of us who are interested in the evolution of multicellularity study is the evolution of development. In fact, it might fairly be said that the origin of multicellularity is the origin of development.

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Volvox 2015: me and my horsy and a quart of beer

 

Licensed to Ill

When I was a senior in high school, I gave my friend Arthur Malpere a ride to school in my ’77 MGB just about every day (well, every day it was running). I had a cassette of the then fairly new Licensed to Ill, and Art insisted that we listen to it every damn day. The ride to school was on the order of ten minutes, so we would listen to ten minutes on the way to school, then pick up where we left off, usually mid-song, on the way home (for those of you too young to remember cassettes, it wasn’t trivial to return to the beginning of a song). Of all the outstanding songs on that album, possibly my favorite was “Paul Revere,” a sort of old-west style automythology of the band’s origin (in spite of the casual misogyny, I still do like it pretty well).

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Expression and form: Arash Kianianmomeni on gene regulation

Kianianmomeni Figure 1

Figure 1 from Kianianmomeni 2015. Gene regulatory mechanisms behind the evolution of multicellularity. Model illustrating the role of gene regulatory mechanisms in the evolution of multicellular Volvox from a Chlamydomonas-like ancestor.

Arash Kianianmomeni’s latest paper in Communicative & Integrative Biology addresses the possible roles of gene regulation and alternative splicing in the evolution of multicellularity and cellular differentiation (Kianianmomeni, A. 2015. Potential impact of gene regulatory mechanisms on the evolution of multicellularity in the volvocine algae. Commun. Integr. Biol., 37–41. doi 10.1080/19420889.2015.1017175). The article is an ‘Addendum’ to a 2014 study by Kianianmomeni and colleagues in BMC Genomics. Communicative & Integrative Biology often invites authors to write these addenda after they have published a (usually high impact) paper elsewhere, providing authors the opportunity to publish material that was not included in the original paper due to space limitations or because it was opinionated or speculative. I may address the BMC Genomics article in a future post, but right now there is more new volvocine research than I have time to write about (it should be an exciting Volvox meeting this summer!).

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