Where’s the duct tape?

Obviously, I did it all wrong. I have a digital video microscope in my lab, but what I did was spend about $20,000 on a nice microscope, $1000 on a digital still camera and about $500 on a digital video camera, and $200 on a pair of custom adapters to link them together. The principle is simple enough, though; you’re just mounting a camera on the scope where your eye would be and grabbing images with a standard computer interface. So here’s New Scientist bragging about building a video microscope for £15.

I’ve done something similar in the past, but I can one-up Lewis Sykes: I made my adapter with cardboard and duct tape, instead of going all out and fabricating fancy-pants acrylic rings.

I should confess that there is a little bit of a quality difference between the images I get on my lab scope and the ones you can get out of $30 microscope. As long as you’re not trying to resolve sub-micron details, though, you can probably get by.

I shouldn’t have read all those Conan books as a kid

My parents never got me nice things. Sure, there was that one Tony the Tiger cereal bowl we kids all fought over back in the 1960s, but they never got us one of these.

i-679f563283091f57b068704f85256a70-skullcups.jpeg

See? If I’d been born just a little earlier, 14,000 years ago instead of in the 1950s, Dad might have given me the skull of one of his enemies from which to dine on my Chocolate Frosted Sugar Bombs. I was deprived.

This cool paper by Bello, Parfitt, and Stringer describes finds from a cave in Somerset, England which, among many other relics of Upper Paleolithic habitation, included several human skull caps with clear signs of post-mortem modification. My father’s lineage descended from people in that part of the world, so now I’m really miffed — it was an old family tradition, and they just didn’t keep it up.

Anyway, the authors analyzed these curious crania and found cut marks where they’d been defleshed, and percussion marks where the bone had been shaped. They’re fairly thorough in describing the process — it’s almost a how-to — so maybe we’ll get something on Etsy or Make magazine sometime.

The distribution of the cut-marks and percussion damage on the Gough’s Cave cranial sample indicates the skilled post-mortem processing of the head. This included careful removal of soft tissues and controlled percussion. Cut-marks on the areas of insertion of neck muscles and the presence of cut-marks in proximity to the foramen magnum indicate that the head was detached from the body at the base of the skull. This is confirmed by the distribution of cut-marks on the axis and atlas vertebrae, which indicate dismemberment of the neck and head. It is likely that this took place shortly after death, before desiccation of the soft tissues or decomposition and natural disarticulation had occurred. The presence of cut-marks on the areas of insertions of the medial pterygoid muscle (both on the sphenoid and the mandible) indicate subsequent detachment of the mandible from the skull. In the case of the two maxillae, the front teeth showed post-mortem scratches and percussion fractures on the inferior border of their labial surfaces. Although non-masticatory scratches on front teeth are well documented, descriptions of percussion modifications are rare in the literature, making it difficult to interpret their significance. Because of the taphonomic and sedimentological characteristics of the site, it is very unlikely that these modifications were naturally produced by sediment pressure or trampling. Neither can these marks be attributed to post-excavation cleaning or instrument damage. If associated with the processing of the head, it is possible that scratches and breakages were induced by a lever inserted between the occlusal plane of the front teeth, in order to disjoint and separate upper and lower jaws. The distribution of cut-marks on the temporal, sphenoid, parietal and zygomatic bones indicate removal of the major muscles of the skull (masseter and temporalis). The location of cut-marks in discrete areas such as the lingual surface of the mandible, the alveolar process of the maxilla, the root of the zygomatic process on the temporal bone and along the fronto-nasal suture, indicates that the tongue, lips, ears, and nose were also removed. Cut-marks around and inside the eye sockets and on the malar fossae of the maxilla suggest extraction of the eyes and cheeks. Finally, the high incidence of oblique para-sagittal cut-marks on the vault, in areas far from the attachment of muscles, on the squama of the frontal and on the parietals on both sides of the sagittal suture, suggests scalp removal. All these modifications are indicative of meticulous removal of the soft tissues covering the skull. The final stage in the sequence of alterations involved controlled percussion resulting in a systematic pattern of removal of the facial bones and the cranial base with minimum breakage of the vault. The distribution of impact damage and flaking is indicative of carefully controlled chipping of the broken edges in order to make them more regular.

Well, I’m going to go have my breakfast now. In a plain old boring ceramic bowl. You know, this heart-healthy diet I’m on would have a little more pizazz if it were served properly…just a hint.

A physicist agrees with me!

So I guess they can’t be all bad. Yesterday, I chastised Michio Kaku severely for stepping out of his expertise as a physicist to say something stupid about biology. James Kakalios agreed with me, and sent along a little essay about the subject that also makes the point that expertise is important.

In Defense of Elites

James Kakalios

Following the recent mid-term elections, the consensus of many pundits is that this past November the American public sent a strong message of “anti-elitism.” The good news is that nothing could be further from the truth.

Americans are certainly not anti-elite, nor are they anti-intellectual. Everyone, after all, wants their doctor, lawyer, or auto-mechanic to be an expert in their field. Few would willingly choose a brain surgeon who was at the bottom of their graduating class, no matter how much fun they may be to share a beer with.

However, Americans are anti-snobbery and have no patience for those whose insecurity compels them to tell us why we’re “wrong” to like what we do, whether it’s NASCAR, fantasy baseball, comic books or Star Wars (OK, the critics may have a point about Episode II: Attack of the Clones). Given the demands of the ever-expanding modern work-week (forget about the jetpack, what I want to know is where’s my four hour work week that was similarly promised to be here in the 21st century!), it is no wonder that that many Americans might devote their limited free time to learning the starting nine players of their local baseball team rather than the nine justices on the Supreme Court.

But there is a real issue that goes beyond a lack of free time. Nearly every week brings another news story of the low regard in which the general public holds intellectuals and scientists. From doubting claims of climatologists concerning the source of changes in the Earth’s average temperature, to persistent attempts by some local school boards to sabotage their children’s education of the principles of Darwinian evolution, the view of many seems to be that “science is just another opinion.”

As a physics professor who is also an avid reader of comic books, I know that it was not always so. Back in the 1950’s and 1960’s, superhero comic books reflected the popular zeitgist and, whether the planet was threatened by invaders from planet X or superpowered master villains, it was typically a scientist that saved the day. Science fiction comic books whose stories took place in the future (sometimes all the way in the year 2000!) often promised that we would live in a gleaming utopia brought to us by scientific advancements.

And in many ways the comic books have been proven correct. Diseases and ailments that were fatal just a few generations ago can now be easily treated, we can peer into the body without the cut of a knife using Magnetic Resonance Imaging, there are few points on the globe that can not be reached by wireless communication, and the computing power of a laptop exceeds that of room-size calculating machines that represented the state of the art in 1950. All brought to us through the efforts of elites.

And this is where the current distrust of scientists becomes a major concern. For there are real problems that need to be addressed, but we can’t handle them without the advice of experts, which are often not respected by both the general public and the scientific community.

The findings and conclusions of scientists and engineers who have devoted years and years to the mastery of their fields of inquiry should be accorded the respect they deserve, and not dismissed for ideological reasons. Few people second-guess the political motivations of their dentist when informed that they have a cavity – why would they do the same with atmospheric scientists when they discuss a hole in the ozone layer? Strong science, elaborated by experts, is the foundation for sound policy.

What happens when experts disagree? More good news — this happens much less than one might think, at least concerning questions of fact (interpretations are another matter). Of course, it is important to realize that not every scientist is an expert in every branch of science (I am concerned here with scientific communication, and not interdisciplinary research). If my cardiologist tells me that I need open heart surgery, I may seek a second opinion before having a difficult and expensive operation — but I won’t consult a dermatologist.

It pains me to say this, but — physics professors are not experts in all fields of science. While we may be able to address, for example, the quantum mechanical mechanisms by which carbon dioxide ignores visible light but absorbs and re—emits infra—red radiation, and can discuss the application of the scientific method, we are not climatologists, and should respect the conclusions of those who have devoted the same time and effort to their field as we have to ours. As the science fiction author Robert Heinlein wrote: “Expertise in one field does not carry over into other fields. But experts often think so. The narrower their field of knowledge the more likely they are to think so.”

Most couples therapists will tell you — miscommunication is a two-way street. Scientists and the general public need to stop talking past each other, so that we can all benefit from the counsel of elite experts. For the problems that we as a nation face are as serious as a heart attack!

James Kakalios is the Taylor Distinguished Professor in the School of Physics and Astronomy at the University of Minnesota, and the author of The Amazing Story of Quantum Mechanics (Gotham, 2010).

Buying science

This week’s Nature has a substantial and fairly even-handed article on the unease Templeton funding causes. Jerry Coyne is prominently featured, so you know it isn’t an entirely friendly review.

Religion is based on dogma and belief, whereas science is based on doubt and questioning,” says Coyne, echoing an argument made by many others. “In religion, faith is a virtue. In science, faith is a vice.” The purpose of the Templeton Foundation is to break down that wall, he says — to reconcile the irreconcilable and give religion scholarly legitimacy.

They also quote scientists who found the Templeton Foundation fairly open and tolerant of results that were not supportive of their prejudices…but I still don’t trust them. They’re busy putting on a show of open-mindedness, and they are staffed by some competent and politically savvy people, and they know that a few Potemkin scientists with contrary results will help in their overall goal of counterfeiting scientific credibility for their religious cause.

This is especially pressing now as Republicans strain to cut science funding — do we really want American science to become increasingly reliant on funding from organizations with an agenda?

How can so many farm state politicians fail to understand the phrase “seed corn”?

Paul Krugman has a lovely phrase to describe Republican policies: Eat the future. They are under pressure to cut spending, any spending, but they refuse to touch anything that might cause immediate pain to the electorate…so instead, anything in the budget that affects future voters is going to get the axe.

Once you understand the imperatives Republicans face, however, it all makes sense. By slashing future-oriented programs, they can deliver the instant spending cuts Tea Partiers demand, without imposing too much immediate pain on voters. And as for the future costs — a population damaged by childhood malnutrition, an increased chance of terrorist attacks, a revenue system undermined by widespread tax evasion — well, tomorrow is another day.

He could have mentioned a few other areas that can be cut, like education, and especially science. Republican voters don’t understand science, they don’t support science, so if there’s anything in the budget that makes Republican politicians salivate in a hungry, predatory way, it’s science. So you won’t be surprised at the prospects for the NIH.

Dear Colleague,

For months the new House leadership has been promising to cut billions in federal funding in fiscal year (FY) 2011. Later this week the House will try to make the rhetoric a reality by voting on HR 1, a “continuing resolution” (CR) that would cut NIH funding by $1.6 billion (5.2%) BELOW the current level – reducing the budget for medical research to $29.4 billion!

We must rally everyone – researchers, trainees, lab personnel – in the scientific community to protest these draconian cuts. Please go to [this link] for instructions on how to call your Representative’s Washington, DC office today! Urge him/her to oppose the cuts to NIH and vote against HR 1. Once you’ve made the call, let us know how it went by sending a short email to the address provided in the call instructions and forward the alert link to your colleagues. We must explain to our Representatives how cuts to NIH will have a devastating impact on their constituents!

Sincerely,

William T. Talman, MD
FASEB President

The cannibals are out there, and they don’t look like you might expect: they wear nice suits and dresses, and they go to church every week, and they are fervent in their patriotism. But they’re planning to eat the future, anyway.

Guinea pigs, please line up here

I have received a request for volunteers to assist as subjects in a research project. I was disappointed; there are no exotic drugs, no catheters, no insane experimental surgeries that will turn you into a super-being with surprising powers beyond all mortal ken, but the fellow did manage to spell my name correctly, so it must be on the up-and-up. Contact Ben Myers (hey! That’s how he got the spelling correct — he cheated!) if you’re interested.

Dr. Myers,

I am an assistant professor of communication studies at USC Upstate. I am in the process of starting a research project and I was wondering if I could ask you for a favor. My research project is centered around atheist/agnostic coming out experiences. For my data, I am planning on collecting stories from those who have “come out” to religious family and friends. I am an ally (and a big fan of your blog). I am interested in this project because of my own very difficult “coming out” experience with my family.
I am planning on doing a rhetorical analysis of common themes across coming out stories. I have included my research plan if you would like more details. Also, I have already received IRB approval for the study.
I will conduct and record interviews over skype. The interviews are open-ended, so I have a few basic questions but I am primarily interested in just letting people tell their stories.
To start the project, I need to find atheists/agnostics who would be willing to share their “coming out” stories. This is where I would like to ask you a favor. I am looking not just for atheist/agnostics, but for atheists/agnostics who have specific “coming out” stories. I am sure there are lots of readers of Pharyngula who would fit the criteria. Would you be willing to dedicate a post to helping me find participants? Perhaps you could post my email and a short blurb about what the research project is about. Participants could then contact me directly.
Also, no need to worry about the project. Any work that results from these interviews will be presented with the ethos of helping readers understand the “coming out” process and how difficult it is. I am an ally, and a proud “out” atheist myself.
Thank you very much for your consideration. And please do not hesitate to ask for additional information if you feel it necessary. And keep on fighting the good fight.

Sincerely,

Ben

—
W. Benjamin Myers, Ph.D.
Assistant Professor of Speech
Department of Fine Arts and Communication Studies
USC Upstate
864.503.5870

Here’s the short research plan.

I have annoyed Jesse Bering

That’s what I do, after all. I strongly criticized his uncritical analysis of a set of rape-related evolutionary psychology studies, and now he responds with a rebuttal. It’s not a very good rebuttal, but I highly recommend his second paragraph in which he lists a good collection of links to several people who also ripped into his article. That part is excellent!

But then let’s get into the part where he argues with me.

P.Z. Myers is not, of course, the undisputed public ambassador of his discipline (although I’ve no doubt he sees himself as such), and by no means does the following apply to all biologists, or even all those who are critical of evolutionary psychology. But Myers’ affect-laden views regarding evolutionary psychology do represent those of at least a significant and vocal minority.

Not an auspicious start to accuse me of regarding myself as “the undisputed public ambassador of” biology, which certainly isn’t the case. This is a blog written by a professor in a small town in rural Minnesota. I’m kind of aware of exactly what it is, and lack the airs Bering wants to assign to me. But then, this isn’t surprising, since most of his following arguments rely on telling me what I intended, and he also gets that wrong. Except this little bit, where he does get the overall objections right.

Critics are particularly irritated by the fact that evolutionary psychologists do not test for genetic inheritance of the very traits they argue are adaptive but instead rely on behavioral or self-report measures to evaluate their theories. They also believe that evolutionary psychologists take too many story-telling liberties in reconstructing the ancestral past, since we can never know for certain what life was like hundreds of thousands of years ago, when such traits would have, theoretically, been favored by natural selection. (This is a point also stressed by Rennie in his critique of my Slate essay.) According to Myers, the whole messy endeavor, therefore, “is a teetering pyramid of stacked ‘couldas’ and guesses that it woulda had an influence on evolution.”

This is actually a reasonable summary of my general disagreements with evolutionary psychology. They are quite fond of inventing evolutionary stories about phenomena that don’t even have an iota of evidence for being genetic, and can come up with truly awesome causal accounts for even the most trivial observations.

He picks out one of my objections to argue why the evolutionary psychology crowd can’t do one of the experiments I didn’t suggest doing, which is a little odd, but OK.

In his post, Myers uses my discussion of the evolution of the human penis as a prime example of the sloppy work being done in the study of evolution and human behavior. He pillories psychologist Gordon Gallup’s famous “dildo study,” which suggests that the distinctive mushroom-capped shape of the penis might serve to scoop a competitor’s semen out of the vagina. (I described this work at long, intimate length in two prior articles in Scientific American.) Myers calls this penis study “tripe” because Gallup and his colleagues failed to show how variations in penis shape within a population–and variations in how the penis is used for coital thrusting–directly affect fertilization rates. Instead, the researchers relied on dildos of different designs, surveys of college students’ detailing their sexual behaviors, and a batch of artificial semen.

Now, I can only assume that Myers has not had to face a university human-research ethics committee in the past several decades. If he had, he would realize that his suggested empirical approach would be unilaterally rejected by these conservative bureaucratic gatekeepers. Does Myers really believe that these seasoned investigators wouldn’t rather have done the full experiment he describes–if only they lived in a less prudish and libellous university world? The fact of the matter is that research psychologists studying human sexuality are hamstrung by necessary ethical constraints when designing their studies. Perhaps Myers would be happy enough to allow investigators into his bedroom to examine the precise depth and vigor to which he plunges into his wife’s vaginal canal after they’ve been separated for a week, but most couples would be a tad more reticent. Gallup’s dildo study, and his related work on penis evolution, offered an ingenious–ingenious–way to get around some very real practical and ethical limitations. Is it perfect? No. Again, the perfect study, conceptually speaking, is often the least ethical one, at least as deemed by research ethics committees. But was it driven by clear, testable, evolutionary hypotheses? Yes. And it offered useful information that was otherwise unknown.

Telling me that they can’t do an experiment that I didn’t suggest doing doesn’t really undermine anything I said. I’m perfectly aware of the ethical limitations of human research, which is one reason why I work on animal models. The problem is that what I actually offered as shortcomings of the work wasn’t their failure to wire up my genitals, but this:

They don’t have any evidence that this behavior actually affects the fertilization rate of one partner’s sperm over another, they don’t have any indication of morphological differences in human populations that make some individuals better semen-scoopers, they don’t have any evidence that this behavior has had a differential effect in human history.

Those are the criteria I would expect to see met in order to discuss this issue as an evolutionary problem; what Bering’s sources were studying were mechanical and physiological aspects of some plumbing (which can be interesting!), and then tacking on unwarranted conclusions about evolutionary history. In fact, I don’t see how Bering’s strange and unexecutable experiment of logging the details of my personal sexual behavior would even touch my evolutionary objections.

He also skips over another relevant point I emphasized. I read the research papers he cited. These were studies that had him “riveted, and convinced”, but when I looked at, for instance, the study that found an increase in women’s handgrip strength during ovulation, the paper itself mentioned that there were many other studies that showed no variation in strength over the menstrual cycle. Which is it? Do you just pick the result that favors your interpretation?

Jerry Coyne has a summary of reactions, too, and mentions several instances where the papers aren’t as clear in their support of the evo-psych hypotheses as is claimed. These are very noisy data that sometimes support and sometimes contradict their claims, and it seems that whatever result they pluck out of the mess, it’s always in support of some purported evolutionarily significant effect on behavior or physiology.

As I said in my previous article, I think the general claim of evolutionary psychology, that our current behavior has been shaped by our biological history, is true. I think much of the research in the field is damaging to their thesis, though, not because it demonstrates the opposite, but because it flits over tiny details, like monthly variations in how a woman moves her hips or how she feels about men, and pretends that they’re all examples of the power of natural selection in sculpting a genome that encodes every pelvic wobble and every nerve impulse. It’s become a kind of modern ornithomancy, where each dip and swirl and change in direction of a flight of birds is interpreted as directly connected to the fate of nations. I remain unconvinced.

What tool would you put in your cognitive toolkit?

The Edge annual question and its answers are out. This year, John Brockman asked, “What scientific concept would improve everybody’s cognitive toolkit?” He got 158 people to send in answers.

I was one of them. If you like my answer, you might also like Sean Carroll’s and Carl Zimmer’s — we seem to have made similar points. Carl has a thread on the topic, and so does Sean: I think I like his original title of dysteleological physicalism better, never mind Carl’s post deploring jargon.

Precious bodily fluids

Last night, I finished reading Paul Offit’s Deadly Choices(amzn/b&n/abe/pwll), his new book about the history of anti-vaccination movements. It’s very good and very thorough and very convincing, and I found it informative because it also takes a broad view, looking everything from the campaigns against Jenner to the crazy talk of Jenny McCarthy. I had never really seen where these opponents of a simple life-saving procedure were coming from, but seeing a few centuries worth of their rhetoric lined up and put on display was helpful, and I finally realized what was wrong with the anti-vaxers.

They’ve all got Jack D. Ripper Syndrome. What drives them nuts is the idea that someone will pollute their (and worse, their children’s) precious bodily fluids with filth and contaminants and base animal substances. It’s a concern about purity and a fear of foreign substances that is amplified beyond all reason; they take a reasonable core concern about cleanliness and avoiding toxins, blow it up into a hysterical terror about a medical procedure that intentionally introduces minute quantities of a foreign substance, and then build pseudoscientific rationalizations for their fear. It’s all gotten a bit ridiculous.

For instance, all the howling about formaldehyde in some vaccines; it’s a trivial amount, a tiny fraction of the quantity your very own metabolism produces in the normal course of a day. If you’re going to get upset about trace formaldehyde in a shot you’ll get once in your life, you ought to be even more upset with your liver, which is trickling more aldehydes than that into your bloodstream every day. Here’s how Offit handles that, in his discussion of the avuncular Dr Bob Sears and his pandering to the anti-vax lobby:

Unfortunately, Sears fails to educate his reader about the importance of quantity—that is, that it’s the dose that makes the poison—and that spacing out vaccines to avoid exposure to quantities of chemicals so small that they have no chance of causing harm will accomplish nothing. For example, Sears claims that formaldehyde is a “carcinogen” (cancer-causing agent) but omits the fact that formaldehyde is a natural product: an essential intermediate in the synthesis of amino acids (the building blocks of proteins) and of thymidines and purines (the building blocs of DNA). Everyone has about two and one-half micrograms of formaldehyde per milliliter of blood. Therefore, young infants have about ten times more formaldehyde circulating in their bodies than is contained in any vaccine. Further, the quanitity of formaldehyde contained in vaccines is at most one six-hundredth of that found to be harmful to animals. It would have been valuable if Sears had informed his readers of these facts rather than scaring them with the notion that formaldehyde in vaccines could cause cancer.

We’re living in a world swarming with all kinds of gunk and goop and dirt and bugs, and some of it is bad for you…but it’s only bad if you get a dose that exceeds your body’s capacity to manage it. The stuff in a vaccine is at such a low concentration and purified to an amazing degree to minimize the quantity of nasties that it contains to a point below the amount that can do anyone harm.

If you’re going to dread a few proteins in a shot, though, I have a tale to make you quiver in disgust. I just had two carrots for lunch, and I didn’t peel them, I just gave them a quick wash in the tap. The quantity of uncharacterized filth and strange chemicals and weird biologically active agents, not to mention the scattered nematodes and bacteria and viruses colonizing the surface of that vegetable, was immense. If I get some random disease in the next day or two, should I blame the carrot farmers of America? Who knows what mysterious pathogens I took into my system via those horrible plants. Farmers raise them in dirt!

(By the way, Orac has a review of Oracian length on this same book. Check it out for the details.)