… is now available online. It’s a brief introduction to some interesting observations about the pufferfish genome.
Pharyngula
Evolution, development, and random biological ejaculations from a godless liberal
… is now available online. It’s a brief introduction to some interesting observations about the pufferfish genome.
Alex Palazzo is talking about open questions in cell biology — in this case, control of organelle shape. Any of us who have poked around in cells know that it is not an amorphous blob of goo, but has characteristic, recognizable elements that we can see from cell to cell. What confers these stereotypic intracellular morphologies on organelles, and what are the functional consequences, if any?
(There are no jebons in there, so you don’t get to use those in your answer.)
It’s not often that something as delicate as details of the reproductive tract get preserved, but here’s a phenomenal fossil of a Devonian placoderm containing the fragile bones of an embryo inside, along with the tracery of an umbilical cord and yolk sac.
This is cool: it says that true viviparity, something more than just retention of an egg internally, but also the formation of specialized maternal/embryonic structures, is at least 380 million years old. Hooray for motherhood!
Here’s a reconstruction of what the animal would have looked like in life, as it is giving birth to its young.
Long JA, Trinajstic K, Young GC, Senden T (2008) Live birth in the Devonian period. Nature 453:650-652.
I’ve discovered a couple of important things at this meeting.
One, late night sessions at west coast meetings are deadly for any of us coming from more eastern time zones. At least the morning sessions are low stress.
Two, I haven’t heard one Drosophila talk yet, and the message is clear: we’re now in the stage of evo-devo in which everyone is diversifying and chasing down a wide array of species. There was a bit of model-system bashing, but at the same time, everyone is acknowledging the crucial role of those traditional, but weird and derived, lab critters in providing a point of comparison and being the source of many of the tools being used to explore phylogeny now. I thought, though, that the smartest comment of the evening was that now everything is a model system.
I’ve got some dense piles of notes on the evening session, but I’m going to give you the short version of everything, with an emphasis on the novel twists.
Michael Akam talked about segmentation genes, which every developmental zoologist now knows inside and out — trust me, this is a familiar topic with over 25 years of detailed research … in Drosophila. Akam made the point that now it’s looking clear that three of the major segmented phyla, the arthropods, annelids, and chordates, may be using related genes to accomplish segmentation, but they seem to be using different mechanisms — so he considers the question of whether segmentation in these three is homologous is still an open question. He also discussed recent work on the centipede Strigamia (definitely not a lab animal: they can’t breed them in the lab yet, so all the work is done by collecting embryos in the field, in Scotland). They have a dynamic pattern of segment addition that is very different from what you find in flies, and more similar in some ways to chodate segmentation.
Chelsea Specht talked about floral evolution in the Zingiberales. I’m an animal guy, so even the most basic stuff in this talk was entirely new to me. I know the general rules of the spatial development of in the fruit fly of the plant world, Arabidopsis, and she gave us a bit of context there, reminding us of the concentric development of sepals, petals, stamens, and carpels. The Zingiberales are a large and diverse group of plants that includes bananas and ginger, and one characteristic is an extravagant modification of the canonical pattern, with extra stamens, a loss of select stamens, and a fusion of stamens to form a novel structure, the labellum, which in these plants functionally replaces the petals. So of course they’re looking into the genes involved in the patterns, which turn out to be the familiar Arabidopsis genes redeployed in new patterns.
Paul Sereno had a talk that took a very different tack, and was unfortunately giving it at the equivalent of 11:00pm Minnesota time, so I’m sorry to say I didn’t follow it carefully. He was discussing the analysis of morphology, and was advocating the development of tools and techniques to compare data sets in addition to the usual output, phylogenetic trees. He was making the case that a lot of morphological studies are actually very poor (a creationist in the audience would have loved it, largely because he wouldn’t have understood the context) because the input data sets of different studies are not comparable.
And now I have to get back to work and listen to the next set of talks.
Did you know that the World Science Festival starts today in New York City? I expect all you eastern city folk to go. Unfortunately, I’m in an airplane flying west today, on my way to Berzerkeley, where we’ll have to celebrate science amongst a band of evolutionary/developmental biologists.
Apparently, NASA has dropped a new probe, Phoenix, on Mars. I’m looking at the first pictures beamed back, and so far, it looks a little too dry for squid, and they’re also promising the existence of ice, which doesn’t sound cephalopod-friendly, either. I’ll keep checking the Bad Astronomer, though — I’m sure that when the first tentacle rises up somewhere on the horizon, he’ll report it.
It’s another transitional form, this time an amphibian from the Permian that shares characteristics of both frogs and salamanders — in life, it would have looked like a short-tailed, wide-headed salamander with frog-like ears, which is why it’s being called a “frogamander”.
We mammals have been beaten again. Shrimp have more sophisticated eyes than we do, with the ability to see things we can’t, and I’m feeling a bit envious.
By now, everyone must be familiar with the inside out organization of the cephalopod eye relative to ours: they have photoreceptors that face towards the light, while we have photoreceptors that are facing away from the light. There are other important differences, though, some of which came out in a recent Nature podcast with Adam Rutherford (which you can listen to here), which was prompted by a recent publication on the structure of squid rhodopsin.
Finals week is upon me, and I should be working on piles of paper work right now, but I need a break … and I have to vent some frustration with the popular press coverage of an important scientific event this week, the publication of a draft of the platypus genome. Over and over again, the newspaper lead is that the platypus is “weird” or “odd” or worse, they imply that the animal is a chimera — “the egg-laying critter is a genetic potpourri — part bird, part reptile and part lactating mammal”. No, no, no, a thousand times no; this is the wrong message. The platypus is not part bird, as birds are an independent and (directly) unrelated lineage; you can say it is part reptile, but that is because it is a member of a great reptilian clade that includes prototherians, marsupials, birds, lizards and snakes, dinosaurs, and us eutherian mammals. We can say with equal justification that we are part reptile, too. What’s interesting about the platypus is that it belongs to a lineage that separated from ours approximately 166 million years ago, deep in the Mesozoic, and it has independently lost different elements of our last common ancestor, and by comparing bits, we can get a clearer picture of what the Jurassic mammals were like, and what we contemporary mammals have gained and lost genetically over the course of evolution.
We can see that the journalistic convention of emphasizing the platypus as an odd duck of a composite creature is missing the whole point if we just look at the title of the paper: “Genome analysis of the platypus reveals unique signatures of evolution.” This is work that is describing the evidence for evolution in a comparative analysis of the genomes of multiple organisms, with emphasis on the newly revealed data from the platypus.
