Ark Park? What Ark Park?

Ken Ham has been planning to build this colossal boondoogle in Kentucky, a life-sized replica of Noah’s Ark. Except they’ve hit one little snag.

Their groundbreaking was pushed back from spring, to summer, to fall, and the most recent media report was to next spring. Meanwhile, their fundraising goal of $24.5 million appears to have ground to a halt at just over $4 million, where it has been for quite a while. They had reached the $3 million mark all the way back in May.

I don’t know what the problem is. $4 million is more than enough to hire one old man with a wooden mallet and a bronze axe for a year.

$4 million is also a lot of moolah for Answers in Genesis to walk away with if their Ark project flops.

(Also on Sb)

Next time, try it without the antibiotics, then I’ll be impressed

Jake Finkbonner was in big trouble: a minor injury led to necrotizing fascitis, and the bacteria chewed up his face, head, and neck in a horrible life-threatening infection. Fortunately, the family placed a relic from a 17th century Native American convert to Catholicism named Tekakwitha on his pillow (it is not clear whether it was a chunk of Tekakwitha’s bones, or one of these lockets, which you can buy for $19.99), and he got better! A miracle!

Now they’re planning to canonize Tekakwitha.

On Monday, the Vatican announced that Pope Benedict XVI formally recognized the miracle attributed to Tekakwitha – the last step on her way to canonization.

Tekakwitha, known as “the Lily of the Mohawks,” was born in 1656 in upstate New York to a Mohawk chief and an Algonquin mother. A smallpox epidemic killed both her parents and left her with partial blindness and a disfigured face. She converted to Catholicism after meeting several priests. Ostracized from her tribal community, Tekakwitha devoted herself to a life of deep prayer. She died in 1680 at age 24. According to the Catholic Church, witnesses said that within minutes of her death, the scars from smallpox completely vanished and her once-disfigured face suddenly shone with radiant beauty.

Oh, I forgot to mention…in addition to the magic locket, Jake spent 9 weeks in a modern hospital, received major surgeries to extirpate the infected tissue, massive doses of antibiotics, and apparently substantial cosmetic surgery. If only St Tekakwitha had been able to get the same, instead of relying entirely on Catholic hoodoo — maybe she wouldn’t have died at 24.

Oh, and there’s a poll. It’s got over 60,000 votes on it already, so I doubt we’ll be able to budge it much, but you can take a stab at it anyway.

Do you believe in miracles?

86.9% Yes
9.5% No
3.6%Not sure

“Do you believe in modern medicine?” would have been a better question. They never ask that one, though.


I do have to say I’m much more impressed with Jake Finkbonner. Here’s what he had to say about it:

There’s been a lot of media around me lately especially with the announcement of Blessed Kateri becoming a Saint based on my story. Please don’t confuse the issue which is that my survival is a miracle. We thank the doctors at Children’s Hospital for all that they did to save my life. I wouldn’t be here without them. I also thank all the people that prayed for me. Obviously, God heard their prayers. This decision to canonize Blessed Kateri is something that the Vatican and the Pope declared, not us. Although we are a part of this story, we did not have any influence on this decision. Congratulations to the Catholic Church and the Native American culture in the canonizing of the now Saint Kateri.

He seems like a gracious and sensible young man.

Why do women menstruate?

Menstruation is a peculiar phenomenon that women go through on a roughly monthly cycle, and it’s not immediately obvious from an evolutionary standpoint why they do it. It’s wasteful — they are throwing away a substantial amount of blood and tissue. It seems hazardous; ancestrally, in a world full of predators and disease, leaving a blood trail or filling a delicate orifice with dying tissue seems like a bad idea. And as many women can tell you, it’s uncomfortable, awkward, and sometimes debilitating. So why, evolution, why?

One assumption some people might make is that that is just the way mammalian reproduction works. This isn’t true! Most mammals do not menstruate — they do not cycle their uterine linings, but instead only build up a thickened endometrium if fertilization occurs, which looks much more efficient. Of the mammals, only most primates, a few bats, and elephant shrews are among the lucky animals that menstruate, and as you can see from the phylogeny, the scattered diversity of menstruating mammals implies that the trait was not present ancestrally — we primates acquired it relatively late.

i-58b845535df701c0ab264735f8049106-menstrual_phylogeny-thumb-500x494-71491.jpeg

Phylogeny showing the distribution of menstruation in placental mammals and the inferred states of ancestral lineages. Menstruating species/lineages are colored in pink, non- menstruating species/lineages in black. Species in which the character state is not known are not colored, and lineages of equivocal state are represented with black lines. Monodelphis represents the outgroup. Inference of ancestral states was performed in MacClade 4 by the parsimony method. Note that there is strong evidence for three independent originations of menstruation among placental mammals.

I suppose we could blame The Curse on The Fall, but then this phylogeny would suggest that Adam and Eve were part of a population of squirrel-like proto-primates living in the early Paleocene. That’s rather unbiblical, though, and what did the bats and elephant shrews do to deserve this?

There are many explanations floating around. One is that it’s a way to flush out nasty pathogens injected into the reproductive tract by ejaculating males — but that phenomenon is ubiquitous, so you have to wonder why only a few species bother. Another explanation is that it’s more efficient to get rid of the endometrium when not using it, than to maintain it indefinitely; but this is a false distinction, because other mammals don’t maintain the endometrium, they just build it up in response to fertilization. And finally, another reason is that humans have rather agressive embryos that implant deeply and intimately with the mother’s tissues, and menstruation “preconditions” the uterine lining to cope with the stress. There is, unfortunately, no evidence that menstruation provides any boost to the ‘toughness’ of the uterus at all.

A new paper by Emera, Romero, and Wagner suggests an interesting new idea. They turn the question around: menstruation isn’t the phenomenon to be explained, decidualization, the production of a thickened endometrial lining, is the key process.

All mammals prepare a specialized membrane for embryo implantation, the difference is that most mammals exhibit triggered decidualization, where the fertilized embryo itself instigates the thickening, while most primates have spontaneous decidualization (SD), which occurs even in the absence of a fertilized embryo. You can, for instance, induce menstruation in mice. By scratching the mouse endometrium, they will go through a pseudopregnancy and build up a thickened endometrial lining that will be shed when progesterone levels drop. So the reason mice don’t menstruate isn’t that they lack a mechanism for shedding the endometrial lining…it’s that they don’t build it up in the first place unless they’re actually going to use it.

So the question is, why do humans have spontaneous decidualization?

The answer that Emera suggests is entirely evolutionary, and involves maternal-fetal conflict. The mother and fetus have an adversarial relationship: mom’s best interest is to survive pregnancy to bear children again, and so her body tries to conserve resources for the long haul. The fetus, on the other hand, benefits from wresting as much from mom as it can, sometimes to the mother’s detriment. The fetus, for instance, manipulates the mother’s hormones to weaken the insulin response, so less sugar is taken up by mom’s cells, making more available for the fetus.

Within the mammals, there is variation in how deeply the fetus sinks its placental teeth into the uterus. Some species are epithelochorial; the connection is entirely superficial. Others are endotheliochorial, in which the placenta pierces the uterine epithelium. And others, the most invasive, are hemochorial, and actually breach maternal blood vessels. Humans are hemochorial. All of the mammalian species that menstruate are also hemochorial.

That’s a hint. Menstruation is a consequence of self-defense. Females build up that thickened uterine lining to protect and insulate themselves from the greedy embryo and its selfish placenta. In species with especially invasive embryos, it’s too late to wait for the moment of implantation — instead, they build up the wall pre-emptively, before and in case of fertilization. Then, if fertilization doesn’t occur, the universal process of responding to declining progesterone levels by sloughing off the lining occurs.

Bonus! Another process that goes on is that the lining of the uterus is also a sensor for fetal quality, detecting chromosomal abnormalities and allowing them to be spontaneously aborted early. There is some evidence for this: women vary in their degree of decidualization, and women with reduced decidualization have been found to become pregnant more often, but also exhibit pregnancy failure more often. So having a prepared uterus not only helps to fend off overly-aggressive fetuses, it allows mom a greater ability to be selective in which fetuses she carries to term.

The authors also have a proposed mechanism for how menstruation could have evolved, and it involves genetic assimilation. Genetic assimilation is a process which begins with an environmentally induced phenotype (in this case, decidualization in response to implantation), which is then strengthened by genetic mutations that stabilize the phenotype — phenotype first, followed by selection for the mutations that reinforce the phenotype. They make predictions from this hypothesis. In species that don’t undergo SD, embryo implantation triggers an elevation of cyclic AMP in the endometrium that causes growth of the lining. If genetic assimilation occurred, they predict that what happened in species with SD was the novel coupling of hormonal signaling to the extant activation process.

If either of these models were correct, we would expect an upregulation of cAMP- stimulating agents in response to pro- gesterone in menstruating species like humans, but not in non-menstruating species such as the mouse.

Results from experiments like those described above will elucidate the evolutionary pathway from induced to spontaneous decidualization, allowing us to answer long-unanswered questions about the evolutionary significance of menstruation. In addition, they will provide mechanistic insights that might be useful in the treatment of common reproductive disorders such as endometriosis, endometrial cancer, preeclampsia, and recurrent pregnancy loss. These disorders involve dysfunctional endometrial responses during the menstrual cycle and pregnancy. Thus, clarifying mechanisms of the normal endometrial response to maternal hormones, i.e. SD, will facilitate identification of genes with abnormal function in women with these disorders. An analysis of how SD came about in evolution can aid in identifying these critical molecular mechanisms.

Evolution, genetic assimilation, a prediction from an evolutionary hypothesis, and significant biomedical applications … that all sounds powerful to me.


Emera D, Romero R, Wagner G (2011) The evolution of menstruation: A new model for genetic assimilation: Explaining molecular origins of maternal responses to fetal invasiveness. Bioessays 34(1):26-35.

(Also on FtB)

Why do women menstruate?

Menstruation is a peculiar phenomenon that women go through on a roughly monthly cycle, and it’s not immediately obvious from an evolutionary standpoint why they do it. It’s wasteful — they are throwing away a substantial amount of blood and tissue. It seems hazardous; ancestrally, in a world full of predators and disease, leaving a blood trail or filling a delicate orifice with dying tissue seems like a bad idea. And as many women can tell you, it’s uncomfortable, awkward, and sometimes debilitating. So why, evolution, why?

One assumption some people might make is that that is just the way mammalian reproduction works. This isn’t true! Most mammals do not menstruate — they do not cycle their uterine linings, but instead only build up a thickened endometrium if fertilization occurs, which looks much more efficient. Of the mammals, only most primates, a few bats, and elephant shrews are among the lucky animals that menstruate, and as you can see from the phylogeny, the scattered diversity of menstruating mammals implies that the trait was not present ancestrally — we primates acquired it relatively late.


Phylogeny showing the distribution of menstruation in placental mammals and the inferred states of ancestral lineages. Menstruating species/lineages are colored in pink, non- menstruating species/lineages in black. Species in which the character state is not known are not colored, and lineages of equivocal state are represented with black lines. Monodelphis represents the outgroup. Inference of ancestral states was performed in MacClade 4 by the parsimony method. Note that there is strong evidence for three independent originations of menstruation among placental mammals.

I suppose we could blame The Curse on The Fall, but then this phylogeny would suggest that Adam and Eve were part of a population of squirrel-like proto-primates living in the early Paleocene. That’s rather unbiblical, though, and what did the bats and elephant shrews do to deserve this?

There are many explanations floating around. One is that it’s a way to flush out nasty pathogens injected into the reproductive tract by ejaculating males — but that phenomenon is ubiquitous, so you have to wonder why only a few species bother. Another explanation is that it’s more efficient to get rid of the endometrium when not using it, than to maintain it indefinitely; but this is a false distinction, because other mammals don’t maintain the endometrium, they just build it up in response to fertilization. And finally, another reason is that humans have rather agressive embryos that implant deeply and intimately with the mother’s tissues, and menstruation “preconditions” the uterine lining to cope with the stress. There is, unfortunately, no evidence that menstruation provides any boost to the ‘toughness’ of the uterus at all.

A new paper by Emera, Romero, and Wagner suggests an interesting new idea. They turn the question around: menstruation isn’t the phenomenon to be explained, decidualization, the production of a thickened endometrial lining, is the key process.

All mammals prepare a specialized membrane for embryo implantation, the difference is that most mammals exhibit triggered decidualization, where the fertilized embryo itself instigates the thickening, while most primates have spontaneous decidualization (SD), which occurs even in the absence of a fertilized embryo. You can, for instance, induce menstruation in mice. By scratching the mouse endometrium, they will go through a pseudopregnancy and build up a thickened endometrial lining that will be shed when progesterone levels drop. So the reason mice don’t menstruate isn’t that they lack a mechanism for shedding the endometrial lining…it’s that they don’t build it up in the first place unless they’re actually going to use it.

So the question is, why do humans have spontaneous decidualization?

The answer that Emera suggests is entirely evolutionary, and involves maternal-fetal conflict. The mother and fetus have an adversarial relationship: mom’s best interest is to survive pregnancy to bear children again, and so her body tries to conserve resources for the long haul. The fetus, on the other hand, benefits from wresting as much from mom as it can, sometimes to the mother’s detriment. The fetus, for instance, manipulates the mother’s hormones to weaken the insulin response, so less sugar is taken up by mom’s cells, making more available for the fetus.

Within the mammals, there is variation in how deeply the fetus sinks its placental teeth into the uterus. Some species are epithelochorial; the connection is entirely superficial. Others are endotheliochorial, in which the placenta pierces the uterine epithelium. And others, the most invasive, are hemochorial, and actually breach maternal blood vessels. Humans are hemochorial. All of the mammalian species that menstruate are also hemochorial.

That’s a hint. Menstruation is a consequence of self-defense. Females build up that thickened uterine lining to protect and insulate themselves from the greedy embryo and its selfish placenta. In species with especially invasive embryos, it’s too late to wait for the moment of implantation — instead, they build up the wall pre-emptively, before and in case of fertilization. Then, if fertilization doesn’t occur, the universal process of responding to declining progesterone levels by sloughing off the lining occurs.

Bonus! Another process that goes on is that the lining of the uterus is also a sensor for fetal quality, detecting chromosomal abnormalities and allowing them to be spontaneously aborted early. There is some evidence for this: women vary in their degree of decidualization, and women with reduced decidualization have been found to become pregnant more often, but also exhibit pregnancy failure more often. So having a prepared uterus not only helps to fend off overly-aggressive fetuses, it allows mom a greater ability to be selective in which fetuses she carries to term.

The authors also have a proposed mechanism for how menstruation could have evolved, and it involves genetic assimilation. Genetic assimilation is a process which begins with an environmentally induced phenotype (in this case, decidualization in response to implantation), which is then strengthened by genetic mutations that stabilize the phenotype — phenotype first, followed by selection for the mutations that reinforce the phenotype. They make predictions from this hypothesis. In species that don’t undergo SD, embryo implantation triggers an elevation of cyclic AMP in the endometrium that causes growth of the lining. If genetic assimilation occurred, they predict that what happened in species with SD was the novel coupling of hormonal signaling to the extant activation process.

If either of these models were correct, we would expect an upregulation of cAMP- stimulating agents in response to pro- gesterone in menstruating species like humans, but not in non-menstruating species such as the mouse.

Results from experiments like those described above will elucidate the evolutionary pathway from induced to spontaneous decidualization, allowing us to answer long-unanswered questions about the evolutionary significance of menstruation. In addition, they will provide mechanistic insights that might be useful in the treatment of common reproductive disorders such as endometriosis, endometrial cancer, preeclampsia, and recurrent pregnancy loss. These disorders involve dysfunctional endometrial responses during the menstrual cycle and pregnancy. Thus, clarifying mechanisms of the normal endometrial response to maternal hormones, i.e. SD, will facilitate identification of genes with abnormal function in women with these disorders. An analysis of how SD came about in evolution can aid in identifying these critical molecular mechanisms.

Evolution, genetic assimilation, a prediction from an evolutionary hypothesis, and significant biomedical applications … that all sounds powerful to me.


Emera D, Romero R, Wagner G (2011) The evolution of menstruation: A new model for genetic assimilation: Explaining molecular origins of maternal responses to fetal invasiveness. Bioessays 34(1):26-35.

(Also on Sb)

P.S. The maternal-fetal conflict is also a conflict between males and females: it is in the man’s reproductive interests to have his genes propagated in any one pregnancy, while it is in the woman’s reproductive interests to bail out and try again if conditions aren’t optimal for any one pregnancy. This conflict is also played out in culture, as well as genetics — pro-choice is a pro-woman strategy, anti-abortion is a pro-man position. Sometimes, politics is a reflection of an evolutionary struggle, too.

Why I am an atheist – Holly

I am an atheist because, if I am to be an honest person, it is the only way I am able to be.

When I was struggling with trying to be Christian in my early 20’s, other Christians who knew I was struggling would tell me to “have faith” and “it will come with time” if I just believe. I was subtly told that I was over-thinking the whole question. (What does it mean to “over-think”?) I tried to be open to God, but I couldn’t stop “over-thinking”. I pleaded with God to reveal himself to me and wondered what was wrong with me that he never did. I wasn’t even asking for much of a sign–I didn’t want a burning bush or a miracle, I just wanted a feeling like so many Christians I knew claimed they had–a feeling of knowing the “truth” and knowing that God was there with me.

I never got such a feeling and I slowly came around to the idea that maybe there was nothing wrong with me. Maybe the reason I wasn’t picking up God’s signal was not because I was a poor receptor but because he wasn’t actually there. The moment I let myself think that, I was on a very quick path to atheism. My “eureka” moment was not “God does not exist” but rather, “I don’t have to believe in God.” It seems obvious to me now, but at the time it was a real revelation (so to speak). I started to see faith for what it is: not the noble, humble position as it is touted, but a lie to oneself–deliberate deceit self-imposed in order to believe in something that’s not true.

I’ve recently become not only an atheist, but an “out” atheist. I talk about it with the religious members of my family. I say it outright if someone asks me if I belong to a church. I updated my facebook “philosophy” to read “atheist” (this was surprisingly difficult for me for whatever reason). I’ve even told a handful of my students when they’ve asked. This newfound zeal came about this year when my husband and I started looking for resources on raising our 3-year-old daughter without religion. We want to raise her to not be afraid–of being different, of being creative, of being smart, of being rational. And so I had to stop and examine how I was living my life and I saw that I had been hiding. I didn’t believe, but I sometimes pretended I did to avoid conflict. I was noncommittal or weakly compromising at best and untruthful at worst, and I don’t want to raise my daughter to think that’s OK.

I became an atheist to be honest with myself and so I had to come out as an atheist to be honest with others.

We teach by example, so I’m working to be an example worth learning from.

Holly
United States

The toxic solution

I suspect a bunch of male priests thought this was a good idea for an ad campaign.

I rather doubt that recruiting from the ranks of people who talk about Real Men and think that Real Men cluster with other Real Men and exclude Real Women is going to help the Catholic Church’s problems — these are not the human beings you’re looking for. Also, isn’t it a little odd to emphasize the masculinity of a profession that demands all of its members be celibate?

I think Cybele had the right idea. Try campaigning on the notion that Real Men cut off their junk in the name of Mary Mother of God and serve as eunuchs. At least that would promote real change in the culture of the church.

Michael Ellenburg is a quack!

Alaska is one of those states afflicted with licensed naturopaths, which basically means they’ve got a bunch of people with no qualifications and a skull full of stupid who get to call themselves doctors and make sick people worse. The premiere Alaskan quack is Michael Ellenburg, one of those guys who peddles everything from homeopathy to traditional Chinese medicine to ozone therapy to acupuncture — the usual cocktail of New Age sewage. Steeped as I currently am in cancer texts in preparation for the next term, I perked right up when I read about Bryomixol.

Bryomixol is an herbal therapy that targets the patient’s immune system function. In patients who have cancer they need to get their immune system to start working properly. Anyone who has cancer does not have a proper functioning immune system, otherwise they would not have cancer. Chemotherapy and Radiation are directed against the tumor(s), they do nothing to support the immune system. Bryomixol can be used in cancer to treat the patient’s immune system; it is not a targeted cancer treatment. Bryomixol specifically effects Natural Killer cell function. NK cells are involved in seeking out and destroying tumor cells, bacteria, and viruses.

Try listening to any of these quacks on the radio (sadly, turn to any of the more liberal networks in your area, and you’ll find them infested with magic medicine shows), and this is the refrain you hear most frequently: “enhance your immune system naturally”. I don’t even know what that means, and I’m a biologist…but it sounds good, doesn’t it?

Unfortunately for all those cancer patients who are going to hand over their money to Ellenburg, bryomixol is also homeopathic: it’s distilled water, nothing more. Ellenburg is a guy who skims profit off the pain and suffering of others, offering nothing in return but a glass of water.