Coyne is on the Loom

We had Neil Shubin here last week, and now Jerry Coyne is guest-blogging at The Loom. I look forward to the day that I can just sit back and invite prominent scientists to do my work for me here.

Although, I have to say that while Coyne is largely correct, he’s being a bit unfair. He’s addressing Olivia Judson’s recent article on “hopeful monsters”, a concept Coyne and the majority of the biological community reject. I reject it, too, but I think there are some legitimate issues that are associated with the idea that are also all too often and unfortunately discarded.

One point that Coyne handles well: there is a disconnect between the magnitude of genotypic changes and phenotypic effects — a single point mutation can cause amazing morphological changes. As Coyne points out, though, although this can happen, it’s not likely to be a major force in evolutionary change. Dramatic, single-step phenotypic effects are the kinds of things that geneticists select for, but they are also exactly the kinds of things that nature selects against. Evolution is much more likely to sidle up towards a major change by successive smaller steps, since those small changes are less likely to be accompanied by major deleterious side effects. Also, phenotypic outcomes of development should be robust to be advantageous, which typically means that there are many regulatory events cooperating to produce them — and they are therefore buffered by multiple controls.

But please, let’s not always dismiss Richard Goldschmidt when discussing “hopeful monsters”. It really wasn’t that awful an idea. Goldschmidt worked on stable variations in organisms: he studied sex differences (ever noticed that males and females have pretty much the same genes, but different phenotypes?) and metamorphosis (similarly, an organism builds two or more very different morphologies with exactly the same genome). He postulated that there could be specific, well-structured, stable nodes of patterns of gene expression — genes weren’t generally fluid, but tended to lock in to particular states. If he were writing today, he’d probably be bringing up the notion of attractors in chaos theory; the ideas are very similar. In that context, he was proposing a worthy concept that should have been taken more seriously than it was — Mayr’s hatchet job was particularly awful.

The “hopeful monster” concept was not shot down by the synthesis — it was ignored. I think it’s been dismantled by developmental biology, though; what we’ve learned is that the stable morphological types we see in a single species are not simply fortunate stable nodes in a nucleus that can be tuned in different ways, but that each are the product of many generations of slow sculpting by the processes of evolution, and that they are riddled with clumsy kluges that aren’t the outcome of some elegant global pattern switching mechanism, but of a long history of small tweaks.

Now also, Coyne is no fan of evo-devo, and he briefly voices the suggestion that the evolutionary developmental biologists are among the sources of this idea that saltational changes lead to sudden, drastic changes in body plans … but I’m just not seeing that. I am seeing work, for instance, that suggests that Hox duplications have been part of the process of producing additions to body plans, but it’s not a case of “poof, arthropods gain a metathorax in one change” — it’s been quite conventional. It’s more like “poof, arthropods gain an extra Hox gene, which initially adds redundancy and is later shaped by evolutionary processes that confer additional specializations on a segment,” quite ordinary stuff that shouldn’t be at all objectionable to Coyne.

It’s especially peculiar to pin the “hopeful monster” concept on evo-devo, when the one evo-devo expert he quotes, the biologist Sean Carroll, explicitly points out that evo-devo doesn’t support it.

Coyne is also going to be speaking at an evo-devo symposium I’ll be attending in April — I’m going to be very interested to hear what he has to say.

Monster mouse

Blogging on Peer-Reviewed Research

The capybara is the current champion for rodents of unusual size — it weighs about 60kg (about 130 pounds); another large rodent is the pakarana, which weighs about a quarter of that. Either one is far too much rattiness for most people to want hanging around.

Now there’s another king of the rodents: Josephoartigasia monesi, which is estimated to have tipped the scales at about 1000kg, over a ton. Don’t worry about getting bigger rat traps; these beasties have been extinct for perhaps 2 million years. I’ve put a few pictures from the paper describing this new species below the fold.

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Where do the hagfish fit in?

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Hagfish are wonderful, beautiful, interesting animals. They are particularly attractive to evolutionary biologists because they have some very suggestive features that look primitive: they have no jaws, and they have no pectoral girdle or paired pectoral fins. They have very poorly developed eyes, no epiphysis, and only one semicircular canal; lampreys, while also lacking jaws, at least have good eyes and two semicircular canals. How hagfish fit into the evolutionary tree is still an open question, however.

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I want a heart in a jar

A lab at the University of Minnesota has done something cool: they’ve grown a functioning heart from stem cells. The problem with building complex organs in a lab is that their normal construction required an elaborate context in the developing embryo, something that is impossible to replicate, short of just growing the whole embryo. The Doris Taylor lab did something very clever: they took an adult rat or rabbit heart and stripped it of its cells, leaving behind a scaffold of nonliving connective tissue. Then they recellularized it with stem cells, and they differentiated appropriately to make a new, beating heart.

They’ve got a long way to go yet — the resynthesized hearts only beat with 2% of the strength of the normal adult heart — but it’s a good start.

You can watch a video describing the work. Warning: it does show one dead rat and a guy with a knife, and there are pulsing pink blobs of hearts in glass chambers, so it may not be for everyone.

Neurulation in zebrafish

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Neurulation is a series of cell movements and shape changes, inductive interactions, and changes in gene expression that partitions tissues into a discrete neural tube. It is one of those early and significant morphogenetic events that define an important tissue, in this case the nervous system, and it’s also an event that can easily go wrong, producing relatively common birth defects like holoprosencephaly and spina bifida. Neurulation has been a somewhat messy phenomenon for comparative embryology, too, because there are not only subtle differences between different vertebrate lineages in precisely how they segregate the neural tissue, but there are also differences along the rostrocaudal axis of an individual organism. A recent review by Lowery and Sive, though, tidies up the confusion and pulls disparate stories together.

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Evolution of vertebrate eyes

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A while back, I summarized a review of the evolution of eyes across the whole of the metazoa — it doesn’t matter whether we’re looking at flies or jellyfish or salmon or shrimp, when you get right down to the biochemistry and cell biology of photoreception, the common ancestry of the visual system is apparent. Vision evolved in the pre-Cambrian, and we have all inherited the same basic machinery — since then, we’ve mainly been elaborating, refining, and randomly varying the structures that add functionality to the eye.

Now there’s a new and wonderfully comprehensive review of the evolution of eyes in one specific lineage, the vertebrates. The message is that, once again, all the heavy lifting, the evolution of a muscled eyeball with a lens and retinal circuitry, was accomplished early, between 550 and 500 million years ago. Most of what biology has been doing since is tweaking — significant tweaking, I’m sure, but the differences between a lamprey eye and our eyes are in the details, not the overall structure.

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