Forever disappointed

I always have unwarrantedly high expectations of creationists. I know that there are some flamingly ignorant nutjobs out there, all your Hams and Hovindses and Luskins, but lurking in my mind is always this suspicion that somewhere there has to be one or two biologically competent ideologues on their side of the fence. And I am always disappointed.

For example, there’s this one fellow, Douglas Axe, who has a legitimate and well-earned doctoral degree in chemical engineering, and several published papers in real science journals (not the fake journals creationists create). The Discovery Institute tapped him to head their Biologic Institute, their attempt to create an organization that would do genuine biological research (it hasn’t, so far). And I thought, hey, maybe this guy at last is a worthy opponent.

But let’s be honest here. I have no illusions that I’m a super-mega-genius, or that I have high standing as a researcher in my field. I’m a grunt in the army of biology, not an officer. So I can imagine someone smarter than me in opposition; I certainly know many on my side who are far more accomplished and intelligent than I am. So you can imagine my disappointment at looking over Axe’s ideas and seeing that he, too, is an incompetent twit.

I was really shocked when he revealed that he didn’t understand coalescence theory at all. It may be a bit esoteric for the lay public, but if you’re a critic of genomics and population genetics, you must at least comprehend the basics. And he doesn’t.

And now he lets me down again. The Biologic Institute is putting out some fresh horror of pseudoscience, a book called Science and Human Origins, in which they presumably bring all their scientific guns to bear in order to question human evolution. And what do they do? They question the evidence of a fusion of chromosome two, something I’ve hammered on Luskin before. And they bumble it up completely.

This stuff isn’t that hard. I’ve explained the basics of synteny, or conserved linkage blocks; fragments of chromosomes are constantly getting shuffled about, inverted, duplicated, and deleted, and we can compare chromosome structure between two species and see exactly how they’ve been juggled. These movements leave traces, and are mechanically well understood; we can see the evidence right therein the sequences.

So Carl Zimmer engaged the Biologic Institute ideologues on their facebook page. They denied that a fusion had occured, and claimed that the evidence was actually against such an event. So Zimmer hit them right where they’re weakest: he asked them to cite that evidence. And what did they do? You know it, it’s familiar. They went dumb and stopped answering. They couldn’t answer the basic question. And this is why I’m vaguely disappointed. Even their self-proclaimed science stars can’t explain something a small-town teaching professor in the Midwest can see laid out plainly in the data.

One benefit, though, is that Carl Zimmer summarized the whole affair in a must-read post. He explains step by step with simple cartoons every event that occurred in the chromosomal fusion, and what the molecular evidence for the phenomenon is. And he shows up the creationists for frauds who won’t address a simple question of sources.

For added hilarity, David Klinghoffer of Evolution News & Views, the DI’s dishonest propaganda organ, has challenged Carl to debate the issue. I don’t know what there is to debate; Gauger, Axe, and Luskin claim there is evidence against a chromosome fusion in human history, Carl asked what it was, and they refused to give it.

So he flatly turned them down, as was sensible to do. Debating creationists is a waste of time. Now that refusal is getting trolled by creationists, accusing him of being ‘afraid’ to debate…and I still don’t know what he’s supposed to argue about. Did the Discovery Institute refuse to cite any evidence supporting their claim? Yes. We’re done.

And my quest for an honest, scientifically competent creationist continues, fruitlessly.

Monstrous

A gunman walked into a midnight showing of the new Batman movie, threw some smoke bombs, and started shooting. 14 are dead, 50+ are wounded, and the killer has been arrested.

I don’t even…

What gets me is the necessary lack of empathy of any kind for the victims, and the futility of it all. Does murdering the defenseless reduce these psychos sense of helplessness? Does it give them a feeling of power? Because all I see is a coward, a weakling, a loser…and one who has just made his own life significantly worse.

Why I am an atheist – Dave H

When I was nine or ten I asked my Dad what caused the universe and he bought me Carl Sagan’s book Cosmos. It was a wonderful book that answered some questions and got me wondering about a whole lot more. Sagan conveyed the majesty of the real world(s), the world(s) we can observe, with such dazzling eloquence that I could not help but embark immediately on a lifelong journey of discovering the  secrets of the cosmos through the books, TV programmes, and (eventually) blogs of astronomers and cosmologists.  It was only natural that my interest should then extend to all of science (and so eventually lead me to Pharyngula).

[Read more…]

Are you an English major looking for work?

I know, you all are. But here’s a job opportunity for a godless, well organized editor.

Atheist Alliance International (AAI, atheistalliance.org) will be launching a new magazine in 2013 and we are looking for an Editor to plan and implement a fresh layout and format! AAI has gone through many changes in the last year or so – including its re-launch as a genuinely global organisation in 2011 and the adoption of new branding earlier this year. Now we are contemplating another major change and we want to find the right person to work with us to restructure and re-launch AAI’s flagship magazine.

This is a contract, self-managed position that involves securing content for each issue, cover design and management of advertising and production.

Secular World magazine is currently published quarterly and available to AAI Members only, but AAI would like to consider broadening publication options to a range of electronic media. Based on quarterly publication the Editor will be paid US$1,250 per issue plus a share of any advertising revenue secured by the Editor and a share of external sales revenue. AAI is willing to discuss the elements of the payment package with applicants.

This is why I could never be an anthropologist

Somedays, it’s just awful to have the mind of a 12 year old boy. So I’m reading this serious and interesting paper on Neandertals, and learn something new.

Two particular characteristics have received considerable attention; pronounced humeral diaphysis strength asymmetry and anteroposteriorly strengthened humeral diaphyseal shape. In particular, humeral bilateral asymmetry for cross-sectional area, and torsional and average bending rigidity, appear exceptionally high in Neandertals (averaging 24–57%) compared to skeletal samples of modern Holocene H. sapiens (averaging 5–14%).

That’s science-speak for “Neandertals had massively muscular right arms compared to their left.” And my mind went right into the gutter.

Anthropologists had their own less juvenile explanations: their strong right arms were a response to extreme muscular activity of repetitive thrusting (ack, back into the gutter) with long, heavy spears (slap me hard.) The paper, though, analyzed muscular activity in experimental subjects who made spear thrusts while hooked up to loads of instrumentation, and discovered that, contrary to their expectations, it was the left arm, the off hand, that carried the largest load in stabilizing the thrust. So that hypothesis simply doesn’t work.

So they tested an alternative explanation, and it wasn’t the first one that leapt to my mind. One of the most common kinds of tools found at Neandertal sites are scrapers —if you’re using hides for clothing and shelter, there is a lot of processing involved — prolonged, repetitive scraping motions while stripping excess flesh from the underside of skins. I imagine scraping a mammoth skin is a huge endeavor that does involve a lot of work. They reviewed ethnographic studies, and discovered that processing a single cow hide, for instance, takes 6-10 hours of work. So they hooked up their test subjects to instruments and measured muscle activity during scraping…and it matches, generating forces that could lead to a build-up of muscle and bone in the right arm.

Unfortunately for my adolescent Neandertal wanking hypothesis, though, the comparison probably doesn’t hold up. Even the most obsessive individual is going to be hard up to maintain 6-10 hours of constant activity. Rats, I guess I’m not going to be making a novel contribution to anthropology. Besides, I imagine this guess was made many times before, and for some reason never made it into print.


Shaw CN, Hofmann CL, Petraglia MD, Stock JT, Gottschall JS (2012) Neandertal Humeri May Reflect Adaptation to Scraping Tasks, but Not Spear Thrusting. PLoS ONE 7(7): e40349. doi:10.1371/journal.pone.0040349.

Chickens or summer camp?

I’m supposed to be raising money for Camp Quest — I’m competing against a team of tiny, gnome-like little people — and they’re actually edging ahead of me. But now a distraction has come up.

Kasese Humanist Primary School is trying to raise money for a chicken coop, so they can get eggs to feed the kids. Aargh…defeat little pests in competition, or feed hungry children in a humanist school?

You knew what had to win. If you can, donate to Kasese Humanist Primary School. We’ll crush our opponents later, after the kids have had their breakfast.

Gotcha!

This is an account from Connie Schultz’s facebook page, so I’ll put the whole thing here for you fb-haters.

Email from conservative blogger, dated July 9, 2012:

Dear Ms. Shultz,

We are doing an expose on journalists in the elite media who socialize with elected officials they are assigned to cover. We have found numerous photos of you with Sen. Sherrod Brown. In one of them, you appear to be hugging him.

Care to comment?

An exposé! Of the elite media! And he’s got the photographic evidence! It sounds so Breitbartian. And the followup is a classic Breitbartian pratfall.

Response, dated July 10, 2012:

Dear Mr. [Name Deleted]:

I am surprised you did not find a photo of me kissing U.S. Sen. Sherrod Brown so hard he passes out from lack of oxygen. He’s really cute.

He’s also my husband.

You know that, right?

Connie Schultz.

I’m sure this will make headlines at the Drudge Report or the Daily Caller or The Blaze or some similar right-wing schlock factory.

Burzynski is still bilking dying children

And credulous newspapers are helping that quack. The latest case is a little girl in Ireland with a disfiguring and deadly rhabdomyosarcoma who is trying to raise money to get the useless and totally fraudulent Burzynski antineoplaston treatment … and this article makes the good point that newspapers are helping to defraud sick people. Both the Irish Times and the Irish Independent reported on the poor girl’s struggle, and they called the fake treatment “pioneering” or “advanced”.

Each uncritical article published about clinics like the Burzynski clinic amounts to free advertising for a treatment which is at best, as yet unproven, and at worst, much more damaging than it is claimed. Though articles about individual patients and families must tread a careful line between criticism of the clinic and the feelings of those involved, the current standard of reporting on these clinics ultimately helps no one. It’s time to stop hiding the controversy, and sweeping it under the carpet. Patients deserve information, not infomercials.

It’s a shame. If you google Burzynski, the first page is full of bullshit promoting the fake treatment — one thing his clinic is good at is SEO — but still, there’s quackwatch and Orac and Larry Moran buried in the muddle, pointing out that this is flaming quackery. You’d think a reasonably intelligent journalist would notice that there’s some controversy here. And even better, you’d expect a reasonably intelligent journalist to pick up a phone, call an oncologist, and ask what they thought of antineoplaston therapy.

But they don’t.

And Burzynski gets free advertising for his $200,000 urine treatments.