Darwinius masillae

This is an important new fossil, a 47 million year old primate nicknamed Ida. She’s a female juvenile who was probably caught in a toxic gas cloud from a volcanic lake, and her body settled into the soft sediments of the lake, where she was buried undisturbed.

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What’s so cool about it?

Age. It’s 47 million years old. That’s interestingly old…it puts us deep into the primate family tree.

Preservation. This is an awesome fossil: it’s almost perfectly complete, with all the bones in place, preserved in its death posture. There is a halo of darkly stained material around it; this is a remnant of the flesh and fur that rotted in place, and allows us to see a rough outline of the body and make estimates of muscle size. Furthermore, the guts and stomach contents are preserved. Ida’s last meal was fruit and leaves, in case you wanted to know.

Life stage. Ida is a young juvenile, estimate to be right on the transition from requiring parental care to independent living. That means she has a mix of baby teeth and adult teeth — she’s a two-fer, giving us information about both.

Phylogeny. A cladistic analysis of the fossil revealed another interesting point. There are two broad groups of primates: the strepsirrhines, which includes the lemurs and lorises, and the haplorhines, which includes monkeys and apes…and us, of course. Ida’s anatomy places her in the haplorhines with us, but at the same time she’s primitive. This is an animal caught shortly after a major branch point in primate evolutionary history.

She’s beautiful and interesting and important, but I do have to take exception to the surprisingly frantic news coverage I’m seeing. She’s being called the “missing link in human evolution”, which is annoying. The whole “missing link” category is a bit of journalistic trumpery: almost every fossil could be called a link, and it feeds the simplistic notion that there could be a single definitive bridge between ancient and modern species. There isn’t: there is the slow shift of whole populations which can branch and diverge. It’s also inappropriate to tag this discovery to human evolution. She’s 47 million years old; she’s also a missing link in chimp evolution, or rhesus monkey evolution. She’s got wider significance than just her relationship to our narrow line.

People have been using remarkable hyperbole when discussing Darwinius. She’s going to affect paleontology “like an asteroid falling down to earth”; she’s the “Mona Lisa” of fossils; she answers all of Darwin’s questions about transitional fossils; she’s “something that the world has never seen before”; “a revolutionary scientific find that will change everything”. Well, OK. I was impressed enough that I immediately made Ida my desktop wallpaper, so I’m not trying to diminish the importance of the find. But let’s not forget that there are lots of transitional forms found all the time. She’s unique as a representative of a new species, but she isn’t at all unique as a representative of the complex history of life on earth.

When Laelaps says, “I have the feeling that this fossil, while spectacular, is being oversold,” I think he’s being spectacularly understated. Wilkins also knocks down the whole “missing link” label. The hype is bad news, not because Ida is unimportant, but because it detracts from the larger body of the fossil record — I doubt that the media will be able to muster as much excitement from whatever new fossil gets published in Nature or Science next week, no matter how significant it may be.

Go ahead and be excited by this find, I know I am. Just remember to be excited tomorrow and the day after and the day after that, because this is perfectly normal science, and it will go on.


Laelaps has some serious reservations about the analysis — the authors may not have done as solid a cladistic analysis as they should, and its position in the family tree may not be as clear as it has been made out to be.


Franzen JL, Gingerich PD, Habersetzer J, Hurum JH, von Koenigswald W, Smith BH (2009) Complete Primate Skeleton from the Middle Eocene of Messel in Germany: Morphology and Paleobiology. PLoS ONE 4(5): e5723. doi:10.1371/journal.pone.0005723.

Puijila darwini

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It’s yet another transitional fossil, everyone! Oooh and aaah over it, and laugh when the creationists scramble to pave it over with excuses.

What we have is a 23 million year old mammal from the Canadian arctic that would have looked rather like a seal in life…with a prominent exception. No flippers, instead having very large feet that were probably webbed. This is a walking seal.

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a, Palatal view of skull; b, lateral view of skull and mandible, left side; c, occlusal view of left mandible. Stippling represents matrix, hatching represents broken bone surface. The images are of three-dimensional scans. The brain case was scanned using computed tomography, whereas all other elements were surface scanned.

What it tells us is that marine pinnipeds almost certainly had an origin in the arctic, derived from terrestrial and semi-aquatic forms — these were more otter-like animals.

You’ll want to learn more about this beautiful creature. There is a website all about Puijila (in English, French, and Inuktitut) where you can find all kinds of images…and you can also find out how to pronounce “Puijila, something we’re all going to have to practice. Who knew paleontology was going to lead us all into learning a few words of Inuktitut?


Rybczynski N, Dawson MR, Tedford RH (2009) A semi-aquatic Arctic mammalian carnivore from the
Miocene epoch and origin of Pinnipedia. Nature 458:1021-1024.

Guiyu oneiros

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A fish is a fish, right? They’re just a blur of aquatic beasties that most people distinguish by flavor, rather than morphology or descent. But fish are incredibly diverse, far more diverse than terrestrial vertebrates, and there are significant divisions within the group. Most people know of one big distinction, between the Chondrichthyes (fish with cartilaginous skeletons, like sharks and rays) and the Osteichthyes (fish with bony skeletons), but there’s another particularly interesting split within the Osteichthyes: the distinction between Sarcopterygians (the word means “fleshy fins”, and we call them lobe-finned fishes colloquially) and the Actinopterygians, the ray-finned fishes. The lobe-finned fishes most distinctive feature is the muscular and bony central core of their fins — extant forms are the coelacanth and lungfish. It is this lineage that led to us terrestrial tetrapods, but other than that successful invasion of the land, the sarcops were something of an aquatic failure, with only a few genera surviving. The ray-finned fishes, on the other hand, are a major success story, with more than 28,000 species today. To put that in context, there are only about 5,500 species of mammals.

The Sarcopterygii and the Actinopterygii must have begun diverging a long time ago, and a couple of questions of interest are a) when did the last common ancestor of both groups live, and b) what did it look like? We don’t have a good and specific answer yet, because Osteichthyes origins are lost far, far back in time, over 400 million years ago, but every new discovery edges us a little closer. What we now have is a well-preserved fossil of a fish that has been determined to be an early sarcopterygian, and it tells us that a) the last common ancestor had to have lived over 419 million years ago, the age of this fossil, and the divergence probably occurred deep in the Silurian, and b) this animal has a mosaic of primitive Osteichthyan features, which tells us that that last common ancestor may well have shared some of these elements. It is another transitional fossil that reveals much about the gradual separation of two great vertebrate groups.

And here it is:

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a, b, A near-complete fish in part and counterpart. c, Close-up view of the anterior portion of the trunk shield in dorsal view, showing MD1 and MD2 flanked by rhomboid scales. d, Close-up view of the dorsal fin spine. MD1, first median dorsal plate; MD2, second median dorsal plate. Scale bar, 1 cm.

That may be a bit disappointing at first — it looks like Silurian road-kill — but really, that’s a remarkable good and useful specimen. The animal was covered with thick bony scales, and the skull was built of thick bony plates, and so while it was squashed flat by pitiless geology, the pieces are all there, and it can be reassembled into a much more fishy state. This drawing may be more satisfying:

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a, Restoration of the entire fish in lateral view. b, Interpretive drawing of the holotype V15541. Areas shaded in grey are unknown, and are reconstructed from other early osteichthyans. ano, anterior nostril; br, branchiostegal ray; cla, clavicle; cle, cleithrum; drs, dorsal ridge scale; dsp, dorsal fin spine; et, extratemporal; eta, accessory extratemporal; f.add, adductor fossa; f.gl, glenoid fossa; gu, gular; ju, jugal; l.ext, lateral extrascapular; lj, lower jaw; m.ext, median extrascapular; mx, maxillary; n.sp., spiracular notch; op, opercular; pa, parietal shield; pcl, postcleithrum; pop, preopercular; ppa, postparietal shield; psc, presupracleithrum; pt, post-temporal; scl, supracleithrum; sop, subopercular; sp., pectoral spine; tr, lepidotrichia; vrs, ventral ridge scale.

Now it looks like a kind of armored, spiky salmon with a thick muscular body (and yes, I too wonder about flavor, and would like to taste a slab of that). It’s definitely not a salmon, though — the bony structure is a curious set of compromises where some features are distinctly sarcopterygian, some look like they belong on a primitive actinopterygian, and others are unique or show affinities to characters of ancient extinct fishes, like rhipidistians. This is very cool. What we see here are relics of an ancient common osteichthyan ancestor, which are being honed into the specific characteristics of the Sarcopterygii. The analysis of the totality of the animal’s features, though, place it more in the lobe-finned than the ray-finned clade. That places it on a branch of the line leading to us…a very, very old branch, making this your many-times-great grand uncle, or cousin only a few million times removed. Now my curiosity about a taste-test is making me feel mildly cannibalistic.

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The topology is the most parsimonious tree arising from a matrix of 23 taxa coded for 153 morphological characters (tree length = 292, consistency index = 0.572, retention index = 0.737, rescaled consistency index = 0.421). The numbers at nodes indicate bootstrap support (where the value is greater than 50%) and Bremer decay index (bottom and top numbers, respectively). Eif., Eifelian; Ems., Emsian; Fam., Famennian; Fras., Frasnian; Giv., Givetian; Gor., Gorstian; Loch., Lochkovian; Lud., Ludfordian; Prag., Pragian.

When you look at that diagram, what should jump out at you is all the diversity in the Devonian, the so-called Age of Fishes, and the paucity of representative fossils from the Silurian…which is exactly where all the interesting branch points in the fish family tree are located. Once again, paleontology is a predictive science, and this tells us where to look for the next batch of exciting and informative fossils.


Zhu M, Zhao W, Jia L, Lu J, Qiao T, Qu Q (2009) The oldest articulated osteichthyan reveals mosaic gnathostome characters. Nature 458:469-474.

Tianyulong

I’m not going to say much about this since Ed Yong has an excellent write-up, but a new feathered dinosaur has been discovered, called Tianyulong. As you can see in this image of the fossil, it was bristling with a fuzz of thin fibers — proto-feathers.

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a, Main slab of the holotype (STMN 26-3). b, Broken slab. The scale bar in b refers also to a. c, Close-up of skull and mandible. d, Interpretive drawing of skull and mandible. e, Close-up of dentition. Abbreviations: a, angular; aof, antorbital fossa; ca, caudal vertebrae; cv, cervical vertebrae; d, dentary; dv, dorsal vertebrae; emf, external mandibular fenestra; en, external naris; f, femur; h, humerus; isc, ischium; j, jugal; l, lacrimal; m, maxilla; n, nasal; pd, predentary; pf, prefrontal; pm, premaxilla; po, postorbital; pub, pubis; q, quadrate; qj, quadratojugal; scaco, scapulocoracoid; sa, surangular; tf, tibia and fibula.

There are a couple of noteworthy features in this creature. One is apparent: feathers just didn’t bloom suddenly in evolution, but appeared in steps. This animal has ‘feathers’ that don’t branch like those of modern birds, but instead form more of a furry coat than a set of flat blades.

The other cool thing is that this is an ornithischian dinosaur; most of the other dinosaurs that have been discovered to have feathers were saurischian. What that means might be made more clear by this diagram:

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It implies that just maybe the last common ancestor of the saurischia and ornithischia were also covered with proto-feathers, which means that feathers may be a primitive state in this lineage.


Zheng X-T, You H-L, Xu X, Dong Z-M (2009) An Early Cretaceous heterodontosaurid dinosaur with filamentous integumentary structures. Nature 458:333-336.

Octopods from the Cretaceous!

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Several new and spectacular cephalopod fossils from 95 million years ago have been found in Lebanon. “Spectacular” is not hyperbole — these specimens have wonderfully well-preserved soft parts, mineralized in fine-grained calcium phosphate, and you can see…well, take a look.

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Keuppia levante sp. nov. from the Upper Cenomanian (Metoicoceras geslinianum Zone) of Hâdjoula (Lebanon). A,
holotype, MSNM i26320a. B, sketch of the holotype.

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How did dinosaurs sit down?

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That question has an answer: they crouched like birds. A 198 million year old fossil trackway from Utah has preserved a print of a theropod dinosaur taking a break, resting with hands curled inward and knuckle down, and legs bent. Except for the forelimbs, of course, it’s very birdlike.

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Restoration of Early Jurassic environment preserved at the SGDS, with the theropod Dilophosaurus wetherilli in bird-like resting pose, demonstrating the manufacture of SGDS.18.T1 resting trace.

Here’s the section of the trace fossil they used to reconstruct the animal’s posture.

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A, Overhead, slightly oblique angle photograph of SGDS.18.T1 resting trace. Note normal Eubrontes track cranial to resting traces (top center) made by track maker during first step upon getting up. Scale bar equals 10 cm. B, Schematic of SGDS.18.T1 to scale with A: first resting traces (manus, pes, and ischial callosity) in red, second (shuffling, pes only) traces in gold, final resting traces (pes and ischial callosity) in green, and tail drag marks made as track maker moved off in blue. Note long metatarsal (“heel”) impressions on pes prints. C, Direct overhead photograph and D, computerized photogrammetry with 5 mm contour lines of Eubrontes trace SGDS.18.T1. Color banding reflects topography (blue-green = lowest, purple-white = highest); a portion of the berm on which the track maker crouched is discernible. Abbreviations: ic = ischial callosity, lm = left manus, lp = left pes, rm = right manus, rp = right pes, td = tail drag marks.

Milner ARC, Harris JD, Lockley MG, Kirkland JI, Matthews NA (2009) Bird-Like Anatomy, Posture, and Behavior Revealed by an Early Jurassic Theropod Dinosaur Resting Trace. PLoS ONE 4(3): e4591. doi:10.1371/journal.pone.0004591

A brief moment in the magnificent history of mankind

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Isn’t that beautiful? It’s an ancient footprint in some lumpy rocks in Kenya…but it is 1½ million years old. It comes from the Koobi Fora formation, familiar to anyone who follows human evolution, and is probably from Homo ergaster. There aren’t a lot of them; one series of three hominin trails containing 2-7 prints, and a stratigraphically separate section with one trail of 2 prints and an isolated single print. But there they are, a preserved record of a trivial event — a few of our remote relatives taking a walk across a mudflat by a river — rendered awesome by their rarity and the magnitude of the time separating us.

Here’s one of the trails:

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Tessellated swath of optical laser scans of the main footprint trail on the upper footprint surface at FwJj14E. Color is rendered with 5-mm isopleths.

It’s an interesting bridge across time. There they were, a couple of pre-humans out for a stroll, perhaps on their way to find something for lunch, or strolling off to urinate, probably nothing dramatic, and these few footprints were left in drying mud to be found over a million years later, when they would be scanned with a laser, digitized, and analyzed with sophisticated software, and then uploaded to a digital network where everyone in the world can take a look at them. Something so ephemeral can be translated across incomprehensible ages…I don’t know about you, but I’m wondering about the possible future fate of the debris of my life that has ended up in landfills, or the other small smudges across the landscape that I’ve left behind me.

And what have we learned? The analysis has looked at the shape of the foot, the angle of the big toe, the distribution of weight as the hominins walked across the substrate, all the anatomical and physiological details that can be possibly extracted from a few footprints.

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Optical laser scan images color-rendered with 5-mm isopleths for footprints at both FwJj14E and GaJi10. (A) Isolated left foot (FUI1) on the upper footprint surface at FwJj14E. (B) Photograph of FUI8 on the upper footprint surface at FwJj14E, showing good definition of the toe pads; the second toe is partially obscured by the third toe. (C) Second trail on the upper footprint surface at FwJj14E, showing two left feet. (D) Third trail on the upper footprint surface at FwJj14E, showing a right and a left foot. (E) Print R3 from GaJi10 (22), re-excavated and scanned as part of this investigation. (F) Partial print (FUT1-2) on the upper footprint surface at FwJj14E; the heel area has been removed by a later bovid print. (G) Print FLI1 on the lower footprint surface at FwJj14E, rendered with 5-mm alternating black and white isopleths. (H) Inverted image of the toe area of print FUT1-1 with alternating 5-mm black and white isopleths. Note the locations of the pads of the small toes and the presence of a well-defined ball beneath the hallucial metatarsophalangeal joint. The first, third, and fifth toes are marked D1, D3, and D5, respectively.

The answer is that these beings walked just like us. The tracks are noticeably different from the even older footprints of australopithecines found at Laetoli, from 3.5 million years ago. The foot shape and the stride of Homo ergaster was statistically indistinguishable from those of modern humans, even though we know from the bones associated with these species that they were cranially distinct from us. This is not a surprise; it’s been known for a long time that we evolved these bipedal forms long ago, and that the cerebral innovations we regard as so characteristic of humanity are a relative late-comer in our history.

Remember, though, these are 1½ million years old, 250 times older than the age of the earth, according to creationists. That’s a lot of wonder and history and evidence to throw away, but they do it anyway.


Bennet MR, Harris JWK, Richmond BG, Braun DR, Mbua E, Kiura P, Olago D, Kibunjia M, Omuombo C, Behrensmeyer AK, Huddart D, Gonzalez S (2009) Early Hominin Foot Morphology Based on 1.5-Million-Year-Old Footprints from Ileret, Kenya. Science 323(5918):1197-1201.

Exposing the intimate details of the sex lives of placoderms

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The media is getting another science story wrong. I keep seeing this discovery of an array of fossil placoderms as revealing the origins of sex, and that’s not right. Sex is much, much older, and arose in single-celled organisms. Come on, plants reproduce sexually. A fish is so far removed from the time of origin of sexual reproduction that it can’t tell us much about its origins.

Let’s get it right. These fossils tells us about the origin of fu…uh, errm, mating in vertebrates.

What we have are a set of placoderm fossils from the Devonian (380 million years ago) of Western Australia (The Aussies are going to be insufferable, now that they can claim to be living in the birthplace of shagging) that show two interesting features: some contain small bits of placoderm armor that show no signs of digestion, and so are not likely to be relics of ancient cannibal feasts, but are the remains of viviparous broods — they were preggers. The other suggestive observation is that the pelvic girdle has structures resembling the claspers of modern sharks, an intromittent organ or penis used for internal fertilization.

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