Faith is not a prerequisite for science

Paul Davies has written a curious op-ed that has been blithely published by the New York Times. I’m not sure why the NYT saw fit to publish it, except that Davies does have a reputation as a popularizer of physics, and as something of an apologist for deism; they certainly couldn’t have chosen to print it on its merits. His argument is the tired and familiar claim that science has to be taken on faith, so it’s just like religion. I recall hearing variants on this back in the schoolyard, usually punctuated with “nyaa nyaas” and assertions about each others’ mothers, and while we may not have said much about science, the principle was the same. Citing a false equivalency is a cheap argument, but not very credible.

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Jaekelopterus

If you’ve been following Lio lately, you know he has a new arthropod friend, rescued from the dinner pot.

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Unfortunately, Lio missed the big news.

The fossil record has yielded various gigantic arthropods, in contrast to their diminutive proportions today. The recent discovery of a 46cm long claw (chelicera) of the pterygotid eurypterid (‘sea scorpion’) Jaekelopterus rhenaniae, from the Early Devonian Willwerath Lagerstätte of Germany, reveals that this form attained a body length of approximately 2.5m–almost half a metre longer than previous estimates of the group, and the largest arthropod ever to have evolved. Gigantism in Late Palaeozoic arthropods is generally attributed to elevated atmospheric oxygen levels, but while this may be applicable to Carboniferous terrestrial taxa, gigantism among aquatic taxa is much more widespread and may be attributed to other extrinsic factors, including environmental resources, predation and competition. A phylogenetic analysis of the pterygotid clade reveals that Jaekelopterus is sister-taxon to the genus Acutiramus, and is among the most derived members of the pterygotids, in contrast to earlier suggestions.

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This isn’t some casual graspy sort of claw, either—it’s a great spiky wicked looking claw, with pointy daggery bits sticking out that make it look like some medieval weapon of terror.

This is a much more Lio-like creature than the dainty little bug in the cartoon. I wouldn’t mind having one of these for a pet myself! It’s too bad they’ve all been dead for 390 million years.

Braddy SJ, Poschmann M, Tetlie OE (2007) Giant claw reveals the largest ever arthropod. Biology Letters doi:10.1098/rsbl.2007.0491.

Stem cell breakthrough

Blogging on Peer-Reviewed Research

A recent discovery in stem cell research is no minor event: researchers have figured out how to reprogram adult cells into a state that is nearly indistinguishable from that of embryonic, pluripotent stem cells. This is huge news that promises to accelerate the pace of research in the field.

The problem has always been that cells exist in distinct states. A skin cell, for instance, has one set of genes essential for its specific function activated, and other sets of genes turned off; an egg cell has different patterns of gene activation and inactivation. Just taking the DNA from a skin cell and inserting it into the egg cell isn’t necessarily going to create a functional egg cell, because genes essential for egg cells may be switched off in the skin cell DNA, and we don’t know how to specifically switch them on. The process of somatic cell nuclear transfer has been hit or miss for that reason, with very high failure rates—scientists are basically trying to make the right configuration of genes switch on by giving the nucleus a good hard kick, and hoping that something in the cells will reconfigure the pattern of gene activation into something appropriate.

What the discovery by Takahashi et al. accomplishes is to reveal how to specifically switch on the right pattern of genes for a pluripotent stem cell. They have discovered the reset button for mammalian cells: a simple trigger that puts the cells in the right state to become anything else.

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Tasmanian devils need your help

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We had a seminar from Marco Restani of St Cloud State University yesterday — he’s a wildlife biologist who talked about Tasmanian Devils. Just a little tip: don’t ever invite wildlife biologists or conservation ecologists to give talks. They are the most depressing people in the world, and they really make it hard to hide away from the ugly realities. This talk was no exception: the Tasmanian Devil is in big trouble, and is facing at least two major threats, each of which may be sufficient to wipe them out. And just looke at that guy! He’s adorable! How can you let them go extinct?

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Telomerase

Since I took Cell Biology last year, the Telomerase Gene has been an object of curiosity to me. Manipulating this pathway could slow down aging. On the other hand, it could be used in the opposite way to fight cancer. I do understand that this raises the ethical issue of how much we are supposed to tamper with. Then again, tampering is what we do as scientists, climbing mountains because they’re there.

I’ve been looking at this article for a paper I still haven’t started for Biochemistry.

Is any one here doing work with telomere regulation? If so, I’d like to here about it.

A celestial omen!

Here I am, rooming with that space case, Phil Plait, and what should appear on the astronomy photo of the day but a cosmic cephalopod, a picture of Comet Holmes that has a resemblance to a cartoon octopus.

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Perhaps this is a sign of reconciliation? That the savage enmity between two science blogs shall be soothed? That the ferocious competition between the best science blog on the web and the blog that tied with a junk science site shall be at an end? That disparate disciplines can find common ground in the beauty of the natural universe?

Naaah, I hope not. The rivalry is too much fun.

Pie in the sky between your thighs

Ladies, there are people who want your menstrual blood. It contains stromal cells, which are a multipotent adult-stem-cell-like population that might be a useful source of fairly plastic, proliferative cells. This distant possibility has prompted one company, C’Elle, to offer to collect, test, purify, and store these cells for you. As they say, these cells “may potentially provide phenomenal life saving treatments and customized therapies in the future“…so you should stash away a supply in cryogenic storage, just in case someone comes up with a use.

There is some serious science here, and Attila Csordas summarizes some of the interesting properties of these cells, but the approach is just weird. This can’t be called fraud — throughout their web site, they plainly admit that there is no practical, applied use for these cells right now, so they aren’t attempting to mislead at all — but they also can’t give a good pragmatic reason why anyone should pay to have their menstrual blood stored away.

That’s right, pay. Fees range from $499 for a single collection, to $1599 for a quarterly collection, with an additional yearly fee of $99-$199 for cryostorage. Yow. And you’ve just been throwing those tampons and pads away, not realizing that that is sludgy red treasure between your legs, and that you ought to be putting it on a high-tech pedestal and preserving it for a lifetime.

We guys are feeling left out, I assure you. I’m hoping we find a multipotent adult stem cell type in mucosal epithelia, so that we too can pay a premium price to honor the potential in our mucky secretions. If there isn’t a company doing this yet, I should start one.

I think I’ll call it “B’ooger™” (pronounced “boo-zhay”, of course).

Later, we may expand to serve a discriminating and exclusively male clientele with “Smeg’ma” (“smay-mwah”). There’s gold in them there slimes!