ORFans!

Paul Nelson has been twittering about ORFans for some time now—he seems to precede his talks by threatening to make us evolutionists tremble in our boots by bringing them up, but he never seems to follow through. Ian Musgrave got tired of waiting for him to give us a coherent creationist argument about them, and has gone ahead and cut him off at the knees by explaining the place of ORFans in evolution.

In case you’re baffled by the jargon, “ORF” is an Open Reading Frame, or a stretch of DNA bracketed by a start and stop codon; it’s a kind of bare minimum criterion for recognizing an actual gene within a DNA sequence. An ORFan is an orphan ORF sequence, or one that doesn’t have a known function or affinity to other known genes. It is not surprising that genes exist that do not have an easily recognized homology with other genes—novel genes have to arise sometime, and we do not have a complete understanding of all sequences of all organisms.

The short answer is that Nelson is deluded, and ORFans do not conflict with evolution at all…but read Ian’s post for all the details.

Are you ready for Coulter?

Here’s a description of the contents of her newest book:

Though liberalism rejects the idea of God and reviles people of faith, it bears all the attributes of a religion itself. In Godless, Ann Coulter throws open the doors of the Church of Liberalism, showing us:

  • Its sacraments (abortion)
  • Its holy writ (Roe v. Wade)
  • Its martyrs (from Soviet spy Alger Hiss to cop-killer Mumia Abu Jamal)
  • Its clergy (public school teachers)
  • Its churches (government schools, where prayer is prohibited but condoms are free)
  • Its doctrine of infallibility (as manifest in the "absolute moral authority" of spokesmen from Cindy Sheehan to Max Cleland)
  • And its cosmology (in which mankind is an inconsequential accident)

Then, of course, there’s the liberal creation myth: Charles Darwin’s theory of evolution.

For liberals, evolution is the touchstone that separates the enlightened from the benighted. But Coulter neatly refutes the charade that liberals are rationalists guided by the ideals of free inquiry and the scientific method. She exposes the essential truth about Darwinian evolution that liberals refuse to confront: it is bogus science.

How many lies can you count in that?

Now here’s the best part: guess who is her source on matters of evolution?

William Dembski.

I’m happy to report that I was in constant correspondence with Ann regarding her chapters on Darwinism.

That is so typical of Coulter’s research: find the most wrong-headed fool around and parrot his ill-informed opinions. This is going to be world-class suckage. This book is going to be a black hole of reason—reading it is going be like sticking your brain in a Cuisanart. What we’re going to find in there is all the lies and nonsense we can expect to hear echoed back at us for the next decade, the dishonest crap that every clueless wingnut bozo is going to absorb instead of real science.

And I’m going to have to read it. For I so love the world that I will sacrifice my neurons to bring my people rebuttals.

The Discovery Institute is bleeding credibility

More than once, I’ve said that I think the Discovery Institute is on the wane; Dover dealt a serious blow to their credibility, and demonstrated that their strategy was not an effective one for helping creationists get their way. That’s really all they had, was the promise that their pseudo-secular approach would give anti-evolutionists an inroad into the public school system, and it is clear now that that is not true.

I’ve also noticed that people give me a leery look when I say that—the DI has been a recent but ubiquitous feature in the Creation Wars—but now I can just tell you all to read this article.

“Dover is a disaster in a sense, as a public-relations matter,” said Bruce Chapman, a former Seattle city councilman and founder of the Discovery Institute, the country’s primary supporter of intelligent design. “It has given a rhetorical weapon to the Darwinists to say a judge has settled this,” he said.

Even some critics of evolution have taken the ruling as a sign that the fight to bring intelligent design into public schools may be over.

Judge Jones voiced it authoritatively, but I think we knew it all along: the backers of ID were almost all creationists of the old school, who saw this as nothing but a loophole they could exploit. Even the Fellows of the DI were readily admitting, outside of their official pontifications and press releases, that they believed their Designer was a God, and the Christian deity no less. The article does a nice job of documenting these beliefs, and here’s something I never thought I would say…I agree with Rush Limbaugh.

“Let’s make no mistake,” Limbaugh said on his radio show. “The people pushing intelligent design believe in the biblical version of creation. Intelligent design is a way, I think, to sneak it into the curriculum and make it less offensive to the liberals.”

Fortunately, that last clause is all wrong (we still found it offensive), so I can still say Limbaugh is a pompous gasbag who derives his authority from oxycontin-fueled bluster rather than evidence, and my world isn’t totally shaken.

Oh, but wait…I also agree with Cal Thomas! My aching brain.

Columnist Thomas, a former spokesman for the conservative Christian political group Moral Majority, said the court decision shows that academic debates, lawsuits and alternate explanations are not the way to fight the secularization of the United States.

“It should awaken religious conservatives to the futility of trying to make a secular state reflect their beliefs,” Thomas wrote.

Now that statement has more ominous overtones coming from Thomas—I think he’s implying that we need to get rid of the secular nature of the state altogether—but in general I think he’s right. Right now we have a body of precedent on the separation of church and state (and enough religious people who also appreciate the protection that separation gives them) that makes it difficult for even the ignorant wingnuts with which the Republicans are trying to stock the courts to ignore, and it is so unambiguously clear that all forms of creationism are religiously motivated, that barring even more radical destruction of the institutions of our government, creationism is just not going to fly overtly in the public schools. The frontal assault on the education system has been rebuffed, and among the severely wounded still moaning on the glacis are the followers of the Discovery Institute, and their generals have also been exposed as comic opera buffoons.

Does this mean I think we’re winning the Creation Wars? Not at all. I think one fairly recent player has been knocked out of contention, at least temporarily, nothing more. The more insidious creationist strategy of sapping the educational system by stocking school boards with anti-intellectual cretins and applying pressure to suppress scientific education and increase scientific ignorance is ongoing and is painfully effective…and we haven’t mustered a strong response to it yet. We flail at individual instances, but don’t have a more permanent institutional strategy for promoting and maintaining good science teaching at the pre-college level. We’re holding the top of the wall while they undermine our foundations, and we know where that is going to lead.

I also think that while we must win court cases like Kitzmiller v. the Dover School Board, we’re fooling ourselves if we think legal decisions are anything more substantial than stopgap measures. Losing a case like that would be catastrophic, but winning has its own costs. It solidifies opposition by feeding resentment. Every court case in this struggle, from Dayton to Dover, has failed to change a single mind, and while they have told us much about creationists and creationism, they’ve done nothing to educate people about science and evolution. And that’s the only place where this war can be won, in public education, both in the schools and among the general public.

RtB on Tiktaalik

There are a number of creationist organizations flourishing in America. One I’ve criticized many times is the Discovery Institute, which I suspect is now waning in influence after the Dover debacle; another is Answers in Genesis, which is a Mecca for the Young Earth Creationists; and one other is Reasons to Believe, which is an Old Earth Creationist haven for crackpots. Despite their doctrinal differences, though, it’s amazing how uniformly they respond to evolutionary discovers with denial. The recent discovery of Tiktaalik has been instructive: all three organizations have now weighed in, and all three trivialize it as meaningless, non-transitional, or even “piddling”. We’ve heard from The Discovery Institute, AiG, and now Zenoferox hacks apart RtB’s response. They’re like mindless clones of each other.

God grants tenure

Some clown at one of the ID blogs is making an incredibly stupid argument. She is claiming that my statement that I would not vote to give tenure to someone incompetent enough to support Intelligent Design creationism as a science is a violation of the Civil Rights Acts of 1964 and 1991 because, as Judge Jones has ruled, ID is founded on a specific religious view. She seems to think that demanding some standards in the review process is equivalent to excluding all religious people…which has some interesting implications. She must assume that the level of idiocy we see in the creationist crowd is implicit in all religious beliefs, and that religious people are incapable of teaching or research without babbling nonsense. She has an even more jaundiced view of the religious than I do!

Her claim, if valid, would mean that we could teach any ol’ belief we wanted in the classroom, and as long as we said it was part of our religion (or was so ludicrously absurd that the only possible justification for it is that it was a religious belief), then the instructor could not be criticized. Astronomy professors could say the Earth was suspended on the back of a turtle, geology professors could literally argue that rocks are the bones of Gaia, chemists could teach their traditional model of the four (and only four!) elements. The foolproof method of gaining tenure would be to come to class every day and read aloud from the bible…and when the tenure review committee justly voted to boot your butt out the door, sue them for violating your civil rights.

The IDists are definitely desperate when this kind of nutjob dreck is how they decide to defend their ideas. I shouldn’t even bother addressing it, it’s so pathetic…so I’ll leave you to read one defender’s view.

I agree with AiG: Najash is not the snake of Genesis

The kooks at Answers in Genesis never disappoint—they always come through with their own daffy interpretations of things. It didn’t take them long to scrape up a few excuses for Najash rionegrina, the newly discovered fossil snake with legs.

They have a couple of incoherent and in some cases mutually contradictory arguments against Najash as evidence for evolution.

[Read more…]

Good ol’ MnGOP

You really must take a look at the Republican Party of Minnesota Permanent Platform. It’s full of interesting goodies.

There are 19 items in the section on civil rights: ten of them are various permutations of “NO ABORTION!”; two are against gun control; one is to protect people from being forced to join labor unions; one promotes the public display of the Ten Commandments; and one is a commendable condemnation of torture and slavery, but with an annoying qualifier.

Condemning religious, political and ethnic persecution in any country, specifically the
oppression, slave labor, torture and murder of religious believers.

I guess oppression, slave labor, torture and murder of the godless warrants only a “meh.”

There’s also the usual insistence that marriage is between a man and a woman only, there shouldn’t even be civil unions or any legal equivalent between same-sex couples, and a new one to me: they want a “Covenant Marriage” option…as if fundamentalists weren’t more prone to divorce than many of us others.

Here’s the one that really gets me, though.

Protecting educators from disciplinary action for including discussion of creation science, adopting science standards that acknowledge the scientific controversies pertaining to the theory of evolution.

There isn’t anything in there about improving science education, or even an acknowledgment of the importance of science; just this lame stance excusing bad teachers for peddling nonsense in the classroom. It’s official. It’s in the state party platform. Minnesota Republicans are creationists.

Let’s bring back barber-surgeons

Spot is quoting Kevin Phillips and his new book, American Theocracy(amzn/b&n/abe/pwll). He’s describing the stagnation of scientific progress in the West when religion set its heavy hand on learning.

Symptom number two [referring to attributes regimes that become increasingly theocratic], related to the first, involves the interplay of faith and science. What might be called the Roman disenlightenment has been well dissected in Charles Freeman’s The Closing of the Western Mind (2002). He dwells on how Rome’s fourth- and fifth-century Christian regimes closed famous libraries like the one in Alexandria, limited the availability of books, discarded the works of Aristotle and Ptolemy, and embraced the dismissal of Greek logicians set forth in the gospel of Paul [well, there is no gospel of Paul, but never mind]. To Freeman, the elevation of faith over logic stifled inquiry in the West- leaving the next advances to Arab mathematicians, doctors, and astronomers-and brought on intellectual stagnation.” It is hard,” he wrote, “to see how mathematics, science or associated disciplines that depended on empirical observations could have made any progress in this atmosphere.” From the last recorded astronomical observation in 475, “it would be over 1,000 years-with the publication of Copernicus’s De Revolutionibus in 1543-before these studies began to move ahead again.”

Keep that in mind while reading Orac’s discussion of creationists in medicine. It’s depressing that such an important and respected profession is overrun with shortsighted ignoramuses.

You can be an adequate doctor and be a creationist: you don’t need to understand evolution to follow your training and cut out a gall bladder or give an injection or diagnose a known disease. It just means that you will follow by rote the procedures of your predecessors. The practice will stay the same, but progress will stop. We will fall once again into the situation Phillips describes (although I suspect our successors will emerge from Farther Asia this time around.)

Orac talks about some of the reasons why it’s difficult to get doctors to be solidly and openly on the side of good science, but I think it’s essential for the prestige and future advancement of the medical profession that more of them think about correcting this failing in their training policies. Are they to be smart, flexible, adaptive, creative, and intellectual people striving to understand the workings of the human body, or is it enough to be a collection of technicians who know how to manipulate the tools of their trade? What makes a doctor different from a chiropractor if neither are to be rooted in good science?