Watching zebrafish make stripes

Our summer research program is winding down, and preparation for the fall semester teaching is winding up. My student, Katrine Sjovold, and I have been trying to figure out what early melanocytes are doing — it’s a very simple and accessible system to observe cell motility, because the cells label themselves with melanin and we don’t need to do any of that persnickety cell injection stuff, or buy expensive dyes, or buy expensive cameras capable of detecting fluorescence (although we’ve tried a little of that here at the end of the summer, and I’ve been appropriately impressed that my research camera actually can see DiI fluorescence, even if it’s not designed for it).

Anyway, one of the things we’ve been doing is making time-lapse videos of melanocytes after they start making pigment and as they’re linking up and consolidating to form stripes. Here’s one example, a time-lapse where we take one image every 3 minutes over a day and an evening of growth.

You can see that we’re looking down on the dorsal side of the animal, in the region of the hindbrain (see the fourth ventricle, and the ears, deep and out of focus?). You may also notice that one of the melanocytes spontaneously decides to die and quickly breaks down into a few darkly pigmented blobs.

I’ve also uploaded a few other videos, but keep in mind these aren’t polished, perfect videos — these are bits and piece of our working data collection.

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What we were vs. what we said we were

This is a factually true statement from Clint Eastwood.

Everybody’s walking on eggshells, said Eastwood, 86. We see people accusing people of being racist and all kinds of stuff. When I grew up, those things weren’t called racist.

He’s right. When I was growing up, too, these things weren’t called racist. They were blatantly, unashamedly, disgustingly racist as fuck, but no one called them racist. If only we could go back to the Good Old Days, when we were all complacently complicit in horrific discrimination and denial.

Clint Eastwood has made some really good movies, and we all obligingly bought our theater tickets and happily gave them positive reviews and all kinds of awards. We acted as if being an excellent film-maker would excuse all of his failings as a human being. I appreciate that he’s made it quite clear that good artists can be terrible people, as he joins that ugly pantheon of crappy artists who have respectable skills: Woody Allen, Roman Polanski, and now Clint Eastwood.

I won’t be watching his new movie, Sully. There’s a gaping hole in his soul that makes him an untrustworthy observer of the human condition.

Let’s all make chimeras

manbearpig

Government regulation of research to enforce ethical concerns is a good idea, and I support the general idea. I’d like them to be based on reasonable concerns, though. I’m actually glad that the NIH has ended a ban on research into human-animal chimeras, although I know some people are going to freak out over it, pointlessly.

Here’s the basic idea. Mammalian embryos are relatively plastic. If you take a mouse embryo at the blastocyst stage, when the embryo is just a small number of cells in a spherical capsule, and you take a few cells from a human blastocyst and inject them into the mouse embryo, those human cells will be readily incorporated into the developing mouse. They can then be incorporated into the mouse’s tissues, so you end up with an adult mouse that has a liver made up of human liver cells. Or a human pancreas. Or, what really scares some people, human-derived brain tissue. Or human-derived gonadal tissue — the mouse could be making human sperm or human eggs, and if a boy mouse with human testes meets a girl mouse with human ovaries…well, you can imagine the concerns.

One issue is that scientists might inadvertently create animals that have partly human brains, endowing them with some semblance of human consciousness or human thinking abilities. Another is that they could develop into animals with human sperm and eggs and breed, producing human embryos or fetuses inside animals or hybrid creatures.

That was the thinking that led to the moratorium on such experiments, now lifted. Which is good.

All of those troubling possibilities are rather easily prevented, and also rather unlikely.

The concerns about animals with “some semblance of human consciousness or human thinking abilities” is simply silly. They already do, and you could also argue that humans have some semblance of animal consciousness. Mice aren’t going to be able to construct whole human brains in their tiny little skulls, although maybe a pig chimera could; but even there, our brains have co-evolved with all kinds of circulatory adaptations, and I rather suspect that a chimera with a significant amount of human brain tissue isn’t going to be viable. And most importantly, the point of such research isn’t to make a human brain in an experimental animal — it’s to get human nervous tissue that will have human-like responses to, for instance, pharmacological treatments.

It’s the same with the reproductive tissue. Making male and female pigs with human reproductive organs would be cool and useful, but bringing them together to do something as mundane as producing a human baby is not — and would be a catastrophic result of the research that would probably lead to the shutting down of the lab and massive legal consequences, all to produce a totally useless result. These are labs that are interested in studying the mechanisms of human sperm maturation, or oocyte development, not the mad scientist nonsense of creating ManBearPig.

Of course, some people don’t like the idea of ending the moratorium.

But critics denounced the decision. “Science fiction writers might have imagined worlds like this — like The Island of Dr. Moreau, Brave New World, Frankenstein,” says Stuart Newman, a biologist at New York Medical College. “There have been speculations. But now they’re becoming more real. And I think that we just can’t say that since it’s possible then let’s do it.”

Let’s do what? That’s the crux of this disagreement — no one is interested in creating The Island of Dr. Moreau in reality. Moreau was an idiot who didn’t do anything practical or informative with his imaginary technology, and using dystopian science fiction as your counter-argument really says you don’t understand the motivations behind this research.

So, I saw Ghostbusters again last night

holtzmann

I don’t usually do that, but a group of our summer research students were getting together to go, so I tagged along. I also had just read this review, and I wanted to try and see it through those eyes.

There is a moment, in the film’s climactic fight scene, when each of the Ghostbusters have exhausted their weapons and had a turn at battling the ever encroaching hoard of ghosts. One of the Ghostbusters, played by Kate McKinnon, remembers her last resort. She whips two hidden guns out of her proton pack, licks the barrel, and, with the Ghostbusters theme song wailing, absolutely DESTROYS every evil thing on screen, in one of the most amazing 30 seconds… 60 seconds? Eternity? Longest moments of my life.

She isn’t a princess. She isn’t a prop. She isn’t a love interest. She is the main character, in a movie with no other “greater” male main characters. She’s being a bad ass action hero, saving the day not for the happy ending kiss, but for herself and her friends and the world. But most importantly… and this is so, so very, very incredibly important: You can’t see her boobs while she does it.

Wait, let me repeat this: she’s a main character, an action hero, AND there’s no sexy impossible back bending moves in the scene that show off a tight catsuit or cleavage or the silhouette of her toned butt. She is not leaping all over the screen just to fuel all the fanboy’s fantasies later at home. She is not wearing sexy make up and she does not even have long hair that blows in the wind, still curled, after she defeats the bad guys. Kate McKinnon’s character saves the world in a dirty, baggy MTA jumpsuit.

I have to say that on a second viewing, the plot looks worse — it’s kind of an arbitrary mess that throws up hordes of ghosts for the heroes to zap. But that review is exactly right about what makes the movie work — it treats women as people.

Now that’s going to color all the other superhero movies that are inevitably going to pour onto the screen over the next few years, and I hope studio executives are noticing. The new movie playing at my local theater now is Suicide Squad, which I have very little interest in seeing for a lot of reasons, including the terrible reviews, but now I’m wondering…is Harley Quinn a human being in the story?

I want to turn this world upside down

Behold Eric Greitens, who is running for office in Missouri by advertising his ability to fire really big guns.

He’s getting millions in donations for his campaign.

Now here’s Daisy Ridley, who attended an event that recognized the victims of gun violence, and wrote this:

Thinking about how lucky I am like……… Serious bit: as I sat in the audience yesterday tears were streaming down my face at the tribute to those that have been lost to gun violence. I didn’t get a great picture of the incredible group that came on stage but they were so brave. It was a true moment of togetherness. We must ‪#‎stoptheviolence‬

Weeping at the useless deaths of so many people so strongly antagonized NRA fanatics that they hounded her off instagram.

I want to live in a world where the Eric Greitens are laughed at and don’t have a chance of being elected to office, and the humanism of the Daisy Ridleys is appreciated and praised.

This is not that world.

Mike Pence, creationist

In 2001, a French anthropologist discovered some very interesting specimens in West Central Africa: the skulls of some 6-7 million year old apes that showed some chimpanzee-like features and some human-like features. He called it Sahelanthropus tchadensis.

In 2002, Mike Pence used the bully pulpit of the house of representatives to denounce Sahelanthropus and the entire theory of evolution, in a pointless exercise of flouting his ignorance. Why, I don’t know; perhaps he thought he could use a scientific discovery to somehow legislate against science? The performance has been caught on video.

It’s an extended riff on the “just a theory” argument, revealing that he doesn’t understand what a scientific theory means. He cites the 1925 Scope trial as the moment where this mere “theory” was legislated into the classroom and taught as fact; wrong. The Scopes trial was the result of a law that tried to prohibit teaching evolution, the side of science lost the case, and the theory has been taught in classrooms ever since because it is the best-supported explanation of the history of life. And evolution is a fact — life has not been static, but species change over time.

Then he claims that we all remember our classrooms illustrated with that linear portrayal of humans evolving from little monkeys to Mel Gibson. Well, I’ve been teaching for 30 years that that linear sequence is wrong, and that evolution is all about branching descent, which is also, as it happens, how Darwin thought about it (that popular Time-Life illustration is a true curse on evolution education).

darwinsdrawing

But I also challenge Pence on his claim that this portrayal was ubiquitous in classrooms. I had a public school education, in the liberal stronghold of King County, Washington, and never once heard the word “evolution” pass the lips of my teachers. What I learned about evolution before college I got from sneaking into the “Adult” section of the local public library, because this was a subject they didn’t even allow children to read about.

Pence reads about Sahelanthropus and claims to be surprised, that this represents a new theory that human evolution was taking place all across Africa and on the Earth. Uh, what? He also criticizes it because the textbooks will have to be changed, because the old theory of evolution…is suddenly replaced by a new theory.

I really want to play poker with Mike Pence. The astonishment on his face when the second hand dealt to him is different from the first will be something to behold. He will be aghast that the rules of poker get changed with every deal.

And then he gets to his point. Every theory is equivalent. We ought to also teach the theory that the signers of the declaration of independence believed — that humans were created by a creator. The Bible tells us that God created man in his own image, male and female he created them, and I believe that. He also thinks that scientists will come to see that only the theory of intelligent design provides even a remotely rational explanation for the known universe. Alas, scientists have scrutinized intelligent design explanations for a century or two now, and have generally found them to be useless crap.

It’s clear. Mike Pence is not only a babbling loon, but he’s a generic Biblical creationist who sees Intelligent Design creationism as a loophole to smuggle his religious ideas into the classroom. He’s wrong about virtually everything in that pompous little speech.

He’s lucky in one thing, though: he’s got Donald Trump boldly distracting most of the media from making any noise about Mike Pence’s incompetence and ignorance. Even without Trump, I don’t want this goober anywhere near high office.

A day in the life of a buffoon

This is just 24 hours of political campaigning by Trump. I’m impressed.

  • In a Washington Post interview, Trump declined to endorse House Speaker Paul Ryan against his primary challenger
  • He reiterated that he hasn’t endorsed Sen. John McCain and said the onetime prisoner of war "has not done a good job for the vets"
  • He slapped out at Republican Sen. Kelly Ayotte, saying "she has given me zero support"
  • He suggested that Americans should pull their 401(k) funds out of the stock market
  • He said he’s "always wanted" to receive a Purple Heart but that having one gifted to him by a supporter was "much easier"
  • He said that the handling of sexual harassment has "got to be up to the individual"
  • He accused Khizr Khan of being "bothered" by his plan to keep terrorists out of the country, and said that he had no regrets about his clash with the family
  • He appeared to feud with a crying baby during a rally
  • He reiterated that "if the election is rigged, I would not be surprised"
  • The sitting president of the United States publicly called Trump "unfit to serve" and urged Republicans to withdraw their support for him.
  • Trump spokesman Katrina Pierson suggested that Obama and Clinton are to blame for the death of Humayan Khan, who died in 2004, when neither were in the executive branch at the time
  • An ally of Paul Manafort told our colleague John Harwood at CNBC that the campaign chairman is "mailing it in," leaving the rest of the staff "suicidal."
  • Sitting GOP congressman Richard Hanna, HP head Meg Whitman and former Christie aide Maria Comella all said they plan to vote for Hillary Clinton
  • The Washington Post released a transcript of its full interview with Trump, indicating among other things that he paused five times to watch TV coverage in the middle of the sit-down
  • A GOP source told NBC’s Katy Tur that Reince Priebus is "apoplectic" over Trump’s refusal to endorse Ryan and is making calls to the campaign to express his "extreme displeasure"

This is a whole new level of incompetence. And he’s got three months more to top it!

It adds a whole new meaning to the phrase, “The Eagles are coming!”

There’s a webcam that has been watching a nest full of ospreys growing up, and the birds were almost ready to begin their flying lessons. Then…they get a visitor.

Is there a metaphor somewhere in this comment about America’s national bird?

The predation of an Osprey nest by an eagle might come as a surprise to many, but eagles are the ultimate opportunists. “They take what’s around and what’s available,” Kress says. And while the activity from the Audubon Camp located nearby usually keeps them away, in the end, “there’s nothing you can really do.”