An object lesson for those who doubted

About 48 hours ago I posted a link to the Twitter feed of the egregious Michael Crook, who had used that fine microblogging service to share loathsome, horrible, explicitly pro-rape opinions regarding Steubenville.

Within minutes, this clown — in the very first comment on the thread — objected, saying that my calling attention to Crook was “feeding a troll.” Twenty minutes after that first comment, this other clown chimed in.

Both claimed that by calling out an egregious “troll” — not a rape advocate, but a “troll” — I had played right into Crook’s game of trollish 12-dimensional chess. Given him “what he wanted.” etc.

That’s manifestly not true, as it turns out. I don’t know what percentage of the attention Crook got came from my link. Perhaps it was a large amount, given the Pharyngula Phyrehose. Perhaps it was just a couple of percentage points. But Crook got a lot of unfavorable attention from all over the feminist and anti-rape sections of the Webonets. Should have made him utterly gleeful, right? As a ‘troll.”

Crook’s Twitter feed is gone. His website seems to be down. Is it reasonable to conclude that he decided there was too much attention being paid to him? Seems so to me. Though perhaps both Twitter and his web host decided to take him down against his will. Which seems less likely, given that the stuff Crook was saying was merely among the most egregious of the hundreds of rape supporters opining on Steubenville, most of whom seem not to have been censored.

I’m guessing he found the public response unpleasant.

Yes, forestalling further trollish objection, Crook is indeed entitled to freedom of speech. And so are we. It would seem sentiments like Crook’s in favor of rape don’t stand up to actual discussion. If people had decided not to “feed the troll,” Crook would very likely still be spreading his pro-rape views online at the moment. But enough people used their own rights to freedom of speech to let him know they found his views repugnant. If he’d been out to troll, he’d have relished that. If he’d had the courage of his convictions, he’d still be arguing.

But instead, that fearless defender of rapists seems to have shut the fuck up for the moment.

That tiny minority of commenters on that thread who scolded those of us who wanted to call Crook’s garbage out publicly: if we’d all listened to you, the world would be a slightly worse place than it is now. I suggest you go to your rooms and think about what you did.

And for those of you who think your voice doesn’t matter? It does. And thank you.

Fair’s fair

I was mean to the History Channel yesterday — I mocked them for portraying Satan as a dark-skinned man with a resemblance to Obama. But you know, that wasn’t fair. It’s not as if that show about the Bible is full of coded racist references to appeal to the yahoos of America.

Why, look here: they also include European white dudes! Racial diversity for the win!

20130319-093023.jpg

That’s Jesus, by the way. After the Sermon on the Mount, I think he took a break to go surfing off Malibu.

How not to read a graph

This ought to be on Skepchick’s Bad Chart Thursday. The Daily Mail — hey, why are you already groaning? — put up a graph to prove that global warming forecasts are WRONG. They say:

The graph on this page blows apart the ‘scientific basis’ for Britain reshaping its entire economy and spending billions in taxes and subsidies in order to cut emissions of greenhouse gases. These moves have already added £100 a year to household energy bills.

…

The estimates – given with 75 per cent and 95 per cent certainty – suggest only a five per cent chance of the real temperature falling outside both bands.

But when the latest official global temperature figures from the Met Office are placed over the predictions, they show how wrong the estimates have been, to the point of falling out of the ‘95 per cent’ band completely.

Now here’s the graph. Let’s see if you can detect where they mangled the interpretation.

mailgraph

(Note: I haven’t looked to see whether the underlying data is correctly presented. I’m only examining the Mail’s ability to read their own chart.)

One error of interpretation is the claim that the ‘predictions’ were plotted in retrospect…as if the scientists had just made up the data. That’s not true — what they did was enter the same kinds of measurements available in the past as we have now, plug them into the computer as inputs, and let it generate predictions. This is an important part of testing the validity of the model — if it gave a poor fit to past data, we’d know not to trust it. That it worked well when giving the past 50 years worth of data is a positive result.

The big error of interpretation is to look at that graph and claim it demonstrates a “spectacular miscalculation.” To the contrary, it shows that the predictions so far have been right. As Lance Parkin says,

It’s an argument presented entirely in their own terms, using only data they presented, framed in language of their choosing. It’s been spun and distorted and shaped as much as they possibly can to get the result they want to get and it still says that the scientists who have consistently and accurately predicted that the world is warming were right. That’s their best shot? It’s rubbish.

Need a cleanser after seeing that? Here are ten charts interpreted correctly and demonstrating the reality of climate change.

People actually read the Daily Mail in the UK, huh? I guess it’s like the US’s Fox News…unaccountably popular.

You can all call me Mahout Myers now

Oh, no. Not again. It’s another arrogant wanker insisting that atheism is a religion, too, and of course, making dumbass arguments to do it. And here they are:

Atheists are, in fact, some of the most religious people.

First, they have a functioning God under whom they are subservient (normally it’s science or rationality, but mainly themselves), and that idea of God informs the way they live and interpret their lives. It informs their biases and determines their values, and governs any sense of morality or ethics they adhere too, or ignore.

So, if you believe in yourself or trust empirically determined facts about the universe, why, that’s exactly the same as believing in gods, therefore we’re all religious. Having any sense of morality is exactly the same as religion, even if it is a secular morality.

We’re not dealing with the most discerning intellect here, are we? Everything in the world is the same gray porridge to him; bicycles and elephants are all just objects, you know, so when people try to tell me they’re different, I’m going to say NO, and I will keep one in my garage and I will attach my pump to its toenails to inflate it and I will find a place to attach this spoke wrench.

The second argument is hilarious: keep in mind that this is a commentator on Fox News.

Once that’s all settled all that’s left is the preaching.

And they preach all the time.

This new breed of atheists is obsessed with the idea of God. They write books, deliver speeches, comment-bomb the evangelical blogosphere and generally rant on ad nauseam about the ills of believing in God.

So when anyone goes on a rant about the ills of liberalism on Fox, it means they really are a liberal themselves? I’ve tuned out that channel for so many years, but I guess I’ve been missing out on some great progressive discussions then.

Maybe, just maybe, we’re obsessed with how religion poisons our culture with endemic stupidity. I’m planning to cite Johnnie Moore, the author of the rant about atheism (oh, hey…I guess that makes him an atheist, too!) as a perfect case study in the future.

Another point he makes is that Richard Dawkins was defeated in a debate with Rowan Williams. It’s true, I looked it up: the audience voted 2:1 in favor of the Anglican priest.

Welp, I guess I gotta give up this atheism thing since a majority of people in England believe in god. Oh, wait…they don’t. It’s kind of evenly split right now.

So I guess I should adopt a faith because Dawkins had an off day?

If you read the summary of the debate, it was about whether religion had a place in modern society, and I thought this young person made a telling point about Dawkins’ performance:

One second year student told TCS: "He did not address the motion. His points focused only on debating whether religion is true, and ignored the question of whether it has a place in modern society."

Heh. Yes. I guess that’s quite perceptive. To some people, it’s completely irrelevant whether a claim is true or false, and they are quite happy to build a society around a lie.

I’m not one of those people. I guess I need to stay an atheist.

(via The Zingularity.)

The Genetic Code is not a synonym for the Bible Code

Oh, boy. The Intelligent Design creationists are all excited about a new paper that purports to have identified an intelligent signal in the genetic code.

Here’s a new paper that can be added to the growing stack of intelligent-design articles in peer-reviewed journals. Even though the authors do not use the phrase “intelligent design,” their reasoning centers on the detection of an intelligent signal embedded in the genetic code — a mathematical and semantic message that cannot be accounted for by a natural cause, “be it Darwinian, Lamarckian,” chemical affinities or energetics, or any other.

I’ve read the paper by ShCherbak and Makukov, and by golly, the Discovery Institute flack really has accurately summarized the paper: it does explicitly and clearly claim to have identified evidence of design in the genetic code! That’s newsworthy in itself, that the creationists can accurately summarize a scientific paper…as long as the results conform to their ideological expectations.

Unfortunately, what they’ve so honestly described is good old honest garbage.

Here’s the short summary of what they do: they jigger the identities of the amino acids coded for by each codon into a number, a nucleon sum. What is that, you might ask? It’s determined by adding up the number of protons and neutrons in the amino acid, which is simply the mass number of the compound. Further, you can distinguish the amino acid into it’s R group, and the atoms that make up the peptide chain proper, which he calls the B group, for standard block. The mass number of the B group is always 74, except for proline, so he transfers a hydrogen from the R group to the proline B group to bring it up to 74, and by the way, did you notice that 74 is two times 37, which is a prime number? Now if you take all the three-digit decimals with identical digits (111, 222, 333…999), and sum their digits (111=3, 222=6, 333=9, etc.) you get the quotient of the number divided by…37!!!1!!

Are you impressed yet? This is simply numerology, juggling highly derived quantities that have little to do with functional properties of the molecules to come up with arbitrary numerical relationships, and then claiming that they’re somehow significant. They also play games with the sums of the mass numbers of just the R groups for certain codons, adding or subtracting the B number, finagling things until they get numbers that are evenly divisible by their magic prime number of 37, etc. It’s pure nonsense through and through.

But every once in a while, something sensible emerges out of the murk. Here’s the logic of their argument:

To be considered unambiguously as an intelligent signal, any patterns in the code must satisfy the following two criteria: (1) they must be highly significant statistically and (2) not only must they possess intelligent-like features, but they should be inconsistent in principle with any natural process, be it Darwinian or Lamarckian evolution, driven by amino acid biosynthesis, genomic changes, affinities between (anti)codons and amino acids, selection for the increased diversity of proteins, energetics of codon-anticodon interactions, or various pre-translational mechanisms.

(1) is simply saying that there must be a pattern of some sort — if the code were purely random assignment of arbitrary nucleotides to each amino acid, it wouldn’t be much of a sign — it would suggest that the sequence is noise, not signal. (2) is the really hard part, the one where you’d have to do a lot of work: you’d have to show that natural processes did not contribute to the pattern. They do not do that. They can’t do that. They take a different and curious tack.

They literally argue that because organizing the code by their nucleon sums makes no sense and has no reasonable functional consequences…therefore it must be an artificial and intentional feature. I’ve heard this argument before. It’s called the Chewbacca defense. Ladies and gentlemen, think about it: that does not make sense! If nucleon numbers show a mathematical pattern of any kind in their relationship to codons, you must accept the existence of a designer.

However, if we can show a natural property that leads to the organization of the genetic code, then I’m afraid their argument evaporates. Even more so than building an argument on the Chewbacca defense, that is.

There’s a very good discussion of the genetic code in Nick Lane’s book, Life Ascending: The Ten Great Inventions of Evolution, and I’ll briefly summarize it.

First, there is a pattern to the genetic code! No one has ever denied that; it’s obviously not the case that amino acids are randomly assigned to trios of nucleotides. Here’s the code:

geneticcode

Let’s look at one amino acid, glycine (Gly), down in the bottom right corner. The genetic code is degenerate: that means that most amino acids have multiple combinations of nucleotides that can specify them. Glycine’s codes are GGU, GGC, GGA, and GGG. Do you see a pattern? The code is actually GG_, where the third position has a lot of slack or wobble, and any nucleotide will do. We see similar cases where just the first two nucleotides are sufficient to specify leucine, valine, serine, proline, threonine, alanine, and arginine. Even with the other amino acids, there are some constraints; CA_ can identify histidine or glutamine, but if the third letter is a pyrimidine (U or C), you get histidine, while if it’s a purine (A or G), you get glutamine. There are patterns all over the place here! So of course ShCherbak and Makukov could find evidence of significant organization.

But there’s more. There are other rules associated with this pattern.

In the synthesis of these amino acids, biochemistry typically modifies a raw starting material. The first letter of the codon says something about the biosynthesis of the associated amino acid.

If the first letter is:
• C, then the amino acid is derived from alpha-ketoglutarate.
• A, then the amino acid is derived from oxaloacetate.
• T, then the amino acid is derived from pyruvate.
• G, then the amino acid is derived in a single step from simple precursors.

The second letter of the codon is correlated with chemical properties of the amino acid.

If the second letter is:
• A, then the amino acid is hydrophilic.
• T, then the amino acid is hydrophobic.
• G or C, the amino acid has an intermediate hydrophobicity.

Wait…so there’s a pattern to the genetic code, and that pattern is associated with the physical properties of the amino acids? Why, that makes sense. Chewbacca is routed! The most likely origin of the code lies in likely catalytic properties of dinucleotides; pairs of nucleotides in ancient organisms were initially functioning as proto-enzymes before they were incorporated into strings of coding information. At least that provides a historical physico-chemical route to the particular code we now have that does not require weird numerological masturbation.

It’s rather pathetic that the Discovery Institute thinks this is a beautiful piece of science. It’s not. It’s nonsense. But look how the DI spins this story:

How will evolutionists respond to this paper? It’s hard to see how they could dismiss it. Maybe they will try to mock it as old Arabian numerology, or religiously inspired (since Kazakhstan, which funded the study, is 70% Muslim). Those would be unfair criticisms. The authors have Russian names, certified doctorates, and wrote in collaboration with leading lights in the West. Or perhaps critics could argue that the authors hail from a foreign country whose name has too many adjacent consonants in it to take them seriously.

No, it appears the only way out for Darwinists would be the “Dawkins Dodge.” You may remember that one from the documentary Expelled, where Dawkins admits the possibility of panspermia for Earth, so long as the designers themselves evolved by a Darwinian process.

What’s most notable about this paper is the similarity in design reasoning between the authors and the more familiar advocates of intelligent design theory. No appeals to religion or religious texts; no identifying the designer; just logical reasoning from effect to sufficient cause. The authors even applied the “design filter” by considering chance and natural law, including natural selection, before inferring design.

If Darwinists want to go on equating intelligent design with creationism, they will now have to take on the very secular journal Icarus.

I didn’t even consider the religious or ethnic basis of this study; it didn’t come to mind at all. It is clearly simple stupid numerology, though. Look at the rationale given for all of the conclusions, which consist entirely of mathematical manipulations of arbitrary derived properties of the molecules, to arrive at a claim of prime number significance.

We certainly don’t need to invoke panspermia. Nothing in the genetic code requires design. and the authors haven’t demonstrated otherwise.

I am most amused by the cute parallelism of claiming surprise that the authors of this paper use “design reasoning” similar to that used by American Intelligent Design creationists. They’ve been slinging this slop for decades; why be impressed that another set of Intelligent Design creationists in Kazakhstan are using the same tired tropes?

I’m also not impressed with the failure of implementation of their logic. OK, they have a ‘design filter’ that they apply, but so what? Their methods failed to recognize a well-known functional association in the genetic code; they did not rule out the operation of natural law before rushing to falsely infer design.

And that last bit…I don’t care what journal it was published in. The prestige of a journal does not confer infallibility, and even the best of journals will occasionally publish crap. They will be especially likely to publish garbage when they stretch beyond the expertise of their reviewers. Icarus is a journal of planetary science that publishes primarily on astronomy and geology. This particular paper conveniently falls between the cracks — it’s a weird paper full of trivial arithmetical manipulations for arcane purposes with no scientific justification for any of its procedures. I don’t know how it got accepted for publication, other than by boring the reviewers with its incomprehensible digit fiddling.

One last thing: don’t rush to claim a secular purpose behind this work. It’s already been appropriated by freaky strange religious fanatics and lovers of the bible codes. You can’t blame shCherbak directly for this weirdo’s interpretations, but certainly he isn’t far from his temperament.

The facts presented on this site, when combined with those now revealed to us by shCherbak, constitute invincible evidence of the truth of the Judeo-Christian Scriptures, and of the Being and Sovereignty of their Divine Author.

Yeah, numerology. Nothing but wanking over tables.

Larry Moran has more — it turns out that Uncommon Descent and Cornelius Hunter also liked this paper. Flies are drawn to shit, I guess.

I’m sure you’ve all been wondering what Answers in Genesis thinks of feminism

Haven’t you? Or perhaps you’ve all assumed the answer is obvious.

Sadly, I don’t have any surprises to spring — the answer is actually rather predictable. They’re agin’ it. They do concede that suffrage was OK, and they think it’s acceptable for women to vote — how liberal of them, and it only took them a century to come around — but all that 2nd and 3rd wave feminism destroyed the family!

So what’s the problem here?

Does history hold a bias against women? Members of the radical feminist movement seem to think so. Radical feminism has had incredibly destructive effects on marriage and the family—and its influence has also been felt on the church. Evangelical feminism teaches an egalitarian view of marriage and roles in the church, to the point where passages that clearly teach male headship are reinterpreted, explained away, or ignored altogether. As a result, many men are abdicating or being forced out of their God-given roles as heads of their households and as leaders in the church. The negative effects of this kind of postmodern thinking have led to serious attacks on the authority of God’s Word.

They don’t really address the issues they bring up…anti-feminism is more or less a fait accompli. As you can see hinted above, they deny any real oppression of women — ladies, your role as a helpmeet is valuable and just perfect for you! The real problem is that feminism erodes male authority. And if you weaken male authority, you weaken the authority of scripture, which says that males are the authority and therefore you weaken male authority, which weakens scripture…hey! Extinction vortex! Goodbye, fundamentalists!

I wish.

Now why would feminists want to diminish godly authority? Easy. They hate men.

Most evangelical feminists would profess to believe in the authority and inerrancy of Scripture, setting them apart from many other forms of feminism. However, their method of interpreting and applying Scripture leaves something to be desired. What is at the heart of a reluctance or even outright refusal to refer to God as “he” and “father”? What drives the redefinition and dismissal of passages of Scripture that promote male headship in marriage and leadership in the church? Grudem concludes, “At the foundation of egalitarianism is a dislike and a rejection of anything uniquely masculine.”

When it comes right down to it, creationist and atheist MRAs are all kind of similarly stupefied and bovine when it comes to recognizing the legitimacy of women’s right to autonomy. Why aren’t they helping me stand at the head of the church, the godly men are wondering, and why aren’t they making me a sammich, the godless ones marvel. Women are so good at performing those subservient tasks, why don’t they appreciate the opportunities to do more and more and more?

Nature made them that way. Or god did. Follow your natural/divine purpose, as revealed to me.

New pope, same as the old pope

It’s Bergoglio, an Argentinian Jesuit that the Rationalist Association had as a 33:1 longshot.

Rumor has it that he’s conservative, hates that contraception and gay marriage crap, believes he has a magic spiritual hotline to the lord of the universe who is named Jesus, and is not — I repeat, is not — scientifically minded or an atheist. He also engages in magical rituals several times a week, and does not encourage women to touch his penis. At least, not openly.

He’s also old.

There. Now you know everything you need to know about the new head of one of the world’s oldest criminal organizations. You can turn off your TVs now.

Good report on Federal wildlife torture from a surprising source

Sometimes, even Fox News gets one right [trigger warnings, as you might expect from the post title]:

The brutal approach by Wildlife Services is part of a culture of animal cruelty that has long persisted within an agency that uses taxpayer money to wage an unnecessary war on wildlife, according to two U.S. congressmen who have repeatedly called for a thorough investigation.

“This agency has become an outlet for people to abuse animals for no particular reason,” Rep. John Campbell, R-Calif., told FoxNews.com.

“It is completely out of control,” he said. “They need to be brought into the 21st century.”

The story covers an investigation that was spurred, in part, by revelations that USDA “Wildlife Services” employee Jamie P. Olson had posted photos of his dogs tearing trapped coyotes to pieces on Facebook. (Previously, on Pharyngula.) The issue’s been kept on the front burner by my colleague Camilla Fox at Project Coyote; she and her organization deserve your attention and support.