What is a species, anyway?

The Devils Hole Pupfish

Interpreting the pupfish

Hilary Rosner has an interesting piece at Wired Science on the campaign to keep the critically endangered Devils Hole pupfish from going extinct.

Background: during the Pluvial period there were a lot of occasionally interconnected lakes in the American southwest, and some of those lakes had little fish in them of what we’d later call genus Cyprinodon. Climate changed, the desert dried up, and desert Cyprinodons found themselves restricted to smaller and smaller bodies of water in the desert. Predictably, speciation occurred when populations were separated, and now five species live in the little bits of remaining fresh and not-so-fresh water in the desert.

Cyprinodon is a cosmopolitan genus, and many of its member species are doing okay, but desert Cyprinodons are having a tough time, as you might expect of freshwater fish in the desert. The Devils Hole pupfish, Cyprinodon diabolus, is facing the biggest threat of all: its only remaining natural habitat is Devils Hole with no apostrophe, a geothermal spring (92°F/33°C) in a limestone cave in Nevada, with the breeding habitat of the entire species limited to a small rock shelf just beneath the surface of the water. A century of groundwater pumping for agriculture has made that habitat even more tenuous. The fish live a year, and there’s a significant seasonal population crash each winter when less light means less algae. In September, according to Rosner, the global population of Devils Hole pupfish dropped from its usual level in the mid-100s to about 75 individuals.

There’s some question rising whether the Devils Hole pupfish is actually a “good” species, or simply a perpetually starved and overheated strain of the neighboring Cyprinodon nevadensis mionectes, the Ash Meadows pupfish. (Cyprinodon nevadensis is commonly split up into six subspecies, all of them but the extinct Cyprinodon nevadensis calidae still holding on slightly better than their cousin in Devils Hole. As Rosner describes, when an Ash Meadows pupfish somehow snuck into a holding tank with some Devils Hole pupfish in it, the pupfish suddenly started breeding more successfully, and within a few generations all the fish had Ash Meadows ancestry.  Predictably, a pupfish biologist has suggested that a few Ash Meadows pupfish be slipped into Devils Hole to reinvigorate the population, and just as predictably others are horrified at the idea.

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Markuze caught again

As everyone knows, and the Montreal police have finally figured out (amazing — he was only spamming the Montreal city police twitter account in addition to all the usual targets), Dennis Markuze has been a naughty young man again, and now he’s been arrested — and released — again.

A Saint-Laurent man has been charged, again, with abusing social media to threaten people who express their views online.

Dennis Markuze, 40, faces three new charges, including one alleging he violated the conditions of a sentence he received in May for the same offence. He was also charged with threatening the Montreal police officer who was investigating claims from several of Markuze’s past victims. Those victims alleged that Markuze’s threats have intensified in recent months.

This isn’t a case where the police should be so involved, I think — Markuze has some serious mental health issues that need more professional help.

Aaargh! Physicists! Again!

A while back, two physicists, Paul Davies and Charles Lineweaver, announced their explanation for cancer with a novel theory, which is theirs, that cancers are atavisms recapitulating in a Haeckelian reverse double backflip their premetazoan ancestry. They seemed very proud of their idea.

I was aghast, as you might guess. They even claimed that human embryos go through a fish/amphibian stage with gills, webbed feet, and tails in a pattern of Haeckelian development. They do not understand evolution, development, or cancer, facts that were apparent even in the absence of their admission that they had no prior knowledge, and it was freaking embarrassing to see two smart guys with a measure of legitimate prestige in their own specialties charging off into another discipline with such crackpot notions.

Now they’ve done it again, repeating the same claims all over again. And worse, they’ve now published it in the journal Physical Biology, under the title “Cancer tumors as Metazoa 1.0: tapping genes of ancient ancestors”.

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The Magic Wand of World Peace

Oh, no…I have to defend Sam Harris a little bit even while disagreeing with him! There was a strange flare-up, a revival of an old interview with Harris from 6 years ago, in which he said something controversial:

If I could wave a magic wand and get rid of either rape or religion, I would not hesitate to get rid of religion.

This is one of those fraught philosophical scenarios loaded with emotional biases against an unrealistic, overly simplified moral dilemma that can never occur in the real world, and all I can say is…I hate those things. And there it was, all over twitter, and people were emailing me about it, and I just wanted the stupid story to go away, but now David Futrelle has highlighted it and John Wilkins has storified it.

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They never learn

The 2012 presidential campaign is over. The 2016 campaign is starting up.

Oh, dog, but I just want them all to fucking go away.

But I am compelled to comment on this. The first Republican out of the starting gate is Marco Rubio. He’s Latino! The Republicans lost the Latino vote again! So he’s exactly what they need: a brown-skinned person who’s just as stupid and socially regressive as the old white geezers they regularly nominate. Apparently, brown-skinned people won’t pay any attention at all to the policies of the candidate, but will just vote on the basis of skin color. Like white Republicans do!

But here’s the thing: Rubio is a creationist moron.

GQ: How old do you think the Earth is?

Marco Rubio: I’m not a scientist, man. I can tell you what recorded history says, I can tell you what the Bible says, but I think that’s a dispute amongst theologians and I think it has nothing to do with the gross domestic product or economic growth of the United States. I think the age of the universe has zero to do with how our economy is going to grow. I’m not a scientist. I don’t think I’m qualified to answer a question like that. At the end of the day, I think there are multiple theories out there on how the universe was created and I think this is a country where people should have the opportunity to teach them all. I think parents should be able to teach their kids what their faith says, what science says. Whether the Earth was created in 7 days, or 7 actual eras, I’m not sure we’ll ever be able to answer that. It’s one of the great mysteries.

BZZZZZT. WRONG.

We have answered that. The Earth is 4½ billion years old. It was not created in 7 days, but evolved over billions of years.

And you know, in a country faced with skyrocketing gas prices, it would be nice to have a leadership that understood where oil comes from (hint: it wasn’t poofed into existence 4000 years ago.) With looming climate change, it would be nice to have a leadership that understood how carbon cycles work and how gases affect the atmosphere (hint: no angels are involved.) With the prospect of emerging infectious diseases, it’s necessary that our leadership understand how microorganisms evolve (hint: the moral turpitude of the victims is not usually a factor.)

I don’t expect a president to be a geologist or physicist or climatologist or microbiologist, but I at least expect them to respect and use the informed advice of scientists.

Rubio won’t. Please let his campaign whither and die on his first visit to Iowa.

A Bad Faith poll

The New Humanist has a yearly Bad Faith award, given to the person who exemplifies the worst of faith in the previous year. We’ve come off a bad year here in the US, and I thought for sure we’d see the slate filled with idiots from this one country…but this poll demonstrates that fools and dangerous nitwits are a global phenomenon. Every one of these people is deserving. You face a tough decision.

Todd Akin 26.18%

Ghulam Ahmed Bilour 11.06%

Lord Carey 5.16%

Prince Charles 8.57%

Joseph Dias and the Catholic Church in Mumbai 15.21%

Nelson McCausland 2.49%

Cardinal Keith O’Brien 11.61%

Baroness Warsi 19.72%

I notice that while only one American made the list, he’s winning handily. USA! USA! #1! USA!

Where is Sanal Edamaruku now?

The Catholic church wants to arrest him in India for exposing the hokum behind a ‘miraculous’ bleeding statue (it was a leaky pipe), so Sanal Edamaruku has been traveling through Europe. His next appearance: Ireland! He’ll be in Galway, Cork, Belfast, and Dublin over the next week, lobbying the people to support the separation of church and state.


Also, he’ll be in London first!

Another frantic day

I’m still grading. I have to review my lecture for today. I have meetings scheduled. And then at 3 I’m scurrying out of my office to race down the road to St Cloud to give a lecture at the St Cloud Public Library at 7. Then zoom, straight back home to do some late night prep work for tomorrow.

But it’s a 4 day weekend coming up! Yay! I’m kind of desperately crawling my way forward to just finish up Wednesday.