No genes were lost in the making of this whale

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I just learned (via John Lynch) about a paper on cetacean limbs that combines developmental biology and paleontology, and makes a lovely argument about the mechanisms behind the evolution of whale morphology. It is an analysis of the molecular determinants of limb formation in modern dolphins, coupled to a comparison of fossil whale limbs, and a reasonable inference about the pattern of change that was responsible for their evolution.

One important point I’d like to make is that even though what we see in the morphology is a pattern of loss—whale hindlimbs show a historical progression over tens of millions of years of steady loss, followed by a near-complete disappearance—the molecular story is very different. The main players in limb formation, the genes Sonic hedgehog (Shh), the Fgfs, and the transcription factor Hand2, are all still present and fully functional in these animals. What has happened, though, is that there have been novel changes to their regulation. Even loss of structures is a consequence of changes and additions to regulatory pathways.

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Beautiful birds?

Crap. Coturnix tagged me with this beautiful bird meme, and I am the wrong person to ask. I don’t get out much, preferring to sit in the lab or the library, so my favorite birds are all in pieces and dead. But OK, since he asked…

Stromatoveris

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The Cambrian vendobiont S. psygmoglena, gen.sp.nov., composite photo of part and counterpart to show both upper and lower surfaces.

From the pre-Cambrian and early Cambrian, we have a collection of enigmatic fossils: the small shellies appear to be bits and pieces of partially shelled animals; there are trace fossils, the tracks of small, soft-bodied wormlike animals; and there are the very peculiar Edicaran vendobionts, which look like fronds and fans and pleated or quilted sheets. In the Cambrian, of course, we find somewhat more familiar creatures—sure, they’re weird and different, but we can at least tentatively see them as precursors to the modern members of their respective phyla. It’s not surprising, though, that the farther back in time we go, the stranger animals appear, and the more difficult it is to place them in our phylogenies.

So here’s something cool and helpful—it looks like a vendobiont, but it’s been found in the Lower Cambrian fossil beds of Chengjiang. It’s also very well preserved, and has features that suggest affinities to the ctenophores.

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Naked anaspids

This strange fish is Euphanerops longaevus, which is one of two species of 370 million year old jawless fishes (the other is Endeiolepis aneri, and the paper suggests that they may actually represent differently preserved members of the same species). These are soft-bodied animals that are usually poorly preserved, and are of interest because they seem to have some properties in common with both the lampreys and the gnathostomes, or jawed fishes. Their exact position in the vertebrate family tree is problematic, and the experts go back and forth on it; sometimes they are grouped with the lampreys, sometimes as cousins more closely related to the gnathostomes.

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Euphanerops longaevus, preserved as an imprint. Scale bar, 10 mm.

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Najash rionegrina, a snake with legs

It’s a busy time for transitional fossil news—first they find a fishapod, and now we’ve got a Cretaceous snake with legs and a pelvis. One’s in the process of gaining legs, the other is in the early stages of losing them.

Najash rionegrina was discovered in a terrestrial fossil deposit in Argentina, which is important in the ongoing debate about whether snakes evolved from marine or terrestrial ancestors. The specimen isn’t entirely complete (but enough material is present to unambiguously identify it as a snake), consisting of a partial skull and a section of trunk. It has a sacrum! It has a pelvic girdle! It has hindlimbs, with femora, fibulae, and tibiae! It’s a definitive snake with legs, and it’s the oldest snake yet found.

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Tiktaalik makes another gap

Paleontologists have uncovered yet another specimen in the lineage leading to modern tetrapods, creating more gaps that will need to be filled. It’s a Sisyphean job, working as an evolutionist.

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This creature is called Tiktaalik roseae, and it was discovered in a project that was specifically launched to find a predicted intermediate form between a distinctly fish-like organism, Panderichthys, and the distinctly tetrapod-like organisms, Acanthostega and Ichthyostega. From the review article by Ahlberg and Clack, we get this summary of Tiktaalik‘s importance:

First, it demonstrates the predictive capacity of palaeontology. The Nunavut field project had the express aim of finding an intermediate between Panderichthys and tetrapods, by searching in sediments from the most probable environment (rivers) and time (early Late Devonian). Second, Tiktaalik adds enormously to our understanding of the fish-tetrapod transition because of its position on the tree and the combination of characters it displays.

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Taphonomy of fossilized embryos

There are these fossilized embryos from the Ediacaran, approximately 570 million years ago, that have been uncovered in the Doushantuo formation in China. I’ve mentioned them before, and as you can see below, they are genuinely spectacular.

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Parapandorina raphospissa

But, you know, I work with comparable fresh embryos all the time, and I can tell you that they are incredibly fragile—it’s easy to damage them and watch them pop (that’s a 2.3MB Quicktime movie), and dead embryos die and decay with amazing speed, minutes to hours. Dead cells release enzymes that trigger a process called autolysis that digests the embryo from within, and any bacteria in the neighborhood—and there are always bacteria around—descend on the tasty corpse and can turn it into a puddle of goo in almost no time at all. It makes a fellow wonder how these fossils could have formed, and what kind of conditions protect the cells from complete destruction before they were mineralized. Another concern is what kinds of embryos are favored by whatever the process is—is there a bias in the preservation?

Now Raff et al. have done a study in experimental taphonomy, the study of the conditions and processes by which organisms are fossilized, and have come up with a couple of answers for me. Short version: the conditions for rapid preservation are fairly easy to generate, but there is a bias in which stages can be reliably preserved.

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