T. Ryan Gregory has announced that you can now read the inaugural issue of Evolution: Education and Outreach, which includes his own article.

This is the new journal set up by Niles and Gregory Eldredge (father and son) to “provide direct linkage between the worlds of scientific
research and the K-16 classroom.” It is definitely one every science teacher should be watching.

Hey, look here: we have an ad in The Chronicle of Higher Education:

Position: Tenure-Track Position in Biology

Institution: University of Minnesota at Morris
Location: Minnesota
Date posted: 11/19/2007

Biology: The University of Minnesota, Morris seeks to fill a tenure-track position in vertebrate biology beginning August 18, 2008. Duties include: teaching undergraduate vertebrate systematics or natural history and sophomore level human physiology; curating and maintaining the discipline’s vertebrate collection; contributing to the university’s general education program; advising undergraduates; conducting research that could involve undergraduates; and sharing in service activities. Minimum qualifications: Ph.D. in zoology or a closely related field and two years experience teaching undergraduates (graduate TA experience acceptable). Send letter of application, resume, transcripts, teaching and research statements, and three letters of reference to: Biology Search Committee Chair, Division of Science and Math, University of Minnesota, Morris, Minnesota 56267-2128. Applications will be accepted until the position is filled. Screening begins January 7, 2008. The University of Minnesota is an equal opportunity educator and employer.

Today I’m looking at synaesthesia, but more specifically lexical-gustatory synaesthesia in which certain phonemes (smallest unit of speech such as the /l/ sound in jelly) trigger specific tastes. For example, in Jamie Ward and Julia Simner’s (2003) report, Lexical-gustatory synaesthesia: linguistic and conceptual factors, a case study was done on a forty year old business man who reported tasting specific tastes in response to certain phonemes. In this case the man reported tasting cake when the phoneme /k/ was used in a word. Synaesthesia is thought to occur due to the crossing over or connection of neurons in certain areas of the brain that regulate and process senses. However, there are differing theories as to how this arises.

One idea is that certain neural connections linking sensory areas are not destroyed in infant stages of development as done in normal development. Synesthetes therefore link one sensation with another because connections are not destroyed. The second theory is that, rather than sensory areas in the brain being directly connected, they are connected through neural pathways in higher processing areas. For instance, instead of just hearing a phoneme and having just any taste sensation, it is the processing of the sequences of phoneme in the word used that links to specific learned schemas connected to the phonemes leading then toward a specific taste. Ward and Simner examined this in their case study.

Through documentation of tastes stimulated by specific words and phoneme triggers, Ward and Simner found that their data supported the latter of the two theories. The largest support comes from the idea that the subject’s tastes are specific for certain learned phoneme association rather than just random association of tastes to arbitrary phonemes. For example, as stated earlier, certain phonemes consistently trigger specific tastes such as the phoneme /k/ and the taste of cake. Also, the use of semantics in the sensory process is a strong argument for higher processing connections as food names exhibit their tastes (cabbage triggers the taste of cabbage). Much of this may be because certain patterns of phonemes can trigger specific tastes that have the same sequence of phonemes. So college, having the phoneme sequence /edg/ triggers the taste of sausage which also contains the phoneme sequence /edg/. These associations are done through higher processing which is learned throughout life, supporting a connection through higher processing areas of the brain rather than direct connection between sensory areas.

Although the idea of a direct connection between sensory areas from birth is not disproved by the study, it has supported that there is higher processing connections involved that have developed through learning. There is still much work in the field of synaesthesia, and with any luck, it will lead us to a better understanding of how our brains develop and process information. But despite all this, the best thing to do right now if you are not a lexical-gustatory synesthete is eat leftover turkey, potatoes (cheesy or mashed), and some pumpkin pie. Happy holidays.
~Bright Lights

I was happily absorbed in my slightly vegetative stupor on the couch when my roommate walked into the room and starting talking about physics. Ugh, physics, I thought, but I politely listened as she began talking about lenses, specifically how they are related to sight. It is common knowledge that the images we see are inverted on the retina, and then further processed. However, my roommate was discussing experiments done on humans that inverted their vision by 180 degrees and found that, though at first they could not function normally, eventually they adapted. I thought this was fascinating, and wondered what the brain had to do with this process. Unfortunately my roommate’s knowledge was pretty limited, so I decided to do some research of my own.

Research on visual distortion of the retina has been going on for quite some time. Devices have been used that invert the retinal image, so that everything is seen upside down. At first subjects wearing this device will reach for things and miss, or will bump into things as they travel about a space. Eventually, they adapt. What I wanted to know is how do they adapt? What changes take place in the brain that allow them to do so? Is it just simply learning to reach a little farther to grab something, or walk a bit differently to avoid bumping into something? What is happening at the neural level?

[Read more…]

The good Lynch of Stranger Fruit was honored as the CASE/Carnegie Professor of the Year awardee for Arizona. Everyone go applaud!

This week I’ve been diving in a little more into doing some actual research myself. Nothing breakthrough mind you, just some simple experiment to sort of understand the world around and inside of me a little better. My partner and I are looking into how the optic nerve develops inside of zebra fish and how its development may be affected by developing the fish in total darkness. We are trying to stain 1-2 day old zebra fish with Dye-I by simply poking the dye into the retina with any sort of small sharp object we can find. We’ll then separate the groups of stained fish into those that develop in a small flask with normal exposure to light (about 10-15 hours a day of UV light) and those that develop in a tin-foil-wrapped flask with no UV exposure in which feeding will be done under red light.

Every few days, I hope to take some of the fish out and look at how their brains are developing using a fluorescent microscope that allows me to see how the dye is traveling. With any luck, I’ll see a decently clear pattern of paths of nerves from the retina to the lateral geniculate. I’m not sure where it leads from there as the zebra fish has mainly the midbrain rather than our large forebrain with a thalamus and cerebral cortex. More research on my fish is definitely needed before I can do any real analyzing of the staining technique, but my real problem right now is just getting some fish stained!

Using a pin head dipped in dye, I had been trying to poke the retinas of these fish. Once the retina ruptures, almost any amount of dye should stain the retina and lead to further staining of the optic nerve as development continues (from what I’ve read, usually the rods and cones develop about 4 days at the earliest). I ran into many problems with this of course and have been fishing (oh so hilarious, I know) for new solutions ever since.

The first problem I had is that the head of the pin is about the size of the fish’s eye itself, so trying to rupture the eye with it is like trying to shove a baseball bat through my own. Of course actually rupturing the retina with this gigantic tool will only happen if my mounted fish would stop moving every time I get close to it, which is the second problem. So far, I’ve created new tools by heating TLC spotters over a flame in the organic chemistry lab and then pulling it in half so that the glass is pulled into a tiny pipette with a head just smaller than the fish’s retina. This has been successful after coupling it with a technique for knocking out my fish to keep them still. I burst a small bubble of anesthetic (0.5 MESAB) over the water that I’m using to mount my fish before injecting the fish in augar onto the slide. This does a great job in keeping the fish still so I can do my dirty work of staining its eye, but sometimes the concentration of anesthetic is too strong and the fish will die. All in all, with much more research and some patience this may turn out to be a fun little project. If you have any ideas as to where I should be looking for research and anything else I could be doing with this experiment, let me know.
~Bright Lights

We’ve been talking quite a bit about how information is processed in our brains so that a specific reflexes and cognitive actions can be produced. It’s also the end of the cross country season and my mind has been mixing the two. Take Steve Prefontaine (one of the greatest American long distance runners of all time) for example. I was watching a video clip of Prefontaine running and paused it right as he was putting his foot down and picking his other leg up. He doesn’t extend his leg out very far. Instead, he lifts his knee up so that he can drive his pronated foot into the ground just under his hip. Since his foot is already pronated, he can further drive his leg behind him and use the ball of his foot as a launch pad to drive himself forward. This technique saves a lot of energy and keeps the runner mostly in the air, rather than on the ground (which is what you want).

Sadly, no one brought the technique to my attention until about halfway through college. I’ve been overextending my legs without picking up my knees, landing on my heels, and rolling to the balls of my feet. This means I use more energy and a lot more time in projecting myself forward each stride. Ever since I learned of proper running techniques I’ve been trying to make them an automatic reflex in my strides, but this is incredibly hard to do.

For the past twenty two years, neurons in the motor cortex of my frontal cortex, cerebellum, Thalamus, and several other regions of my brain have been adapting to coordinate specific muscle actions to create my presently crappy running technique. This spider web of nervous tissue is constantly changing as neurons diverge and converge on each other, become more sensitive to or produce higher concentrations of specific neurotransmitters, and develop other specific interactions with other neurons that perfectly coordinate my behavior and actions. However, it has taken twenty two years to perfectly coordinate all this interaction so that I can run so terribly, meaning that learning to truly run could take a long time as I prune and pair more neurons to coordinate a totally different reflex.

So far I’ve been trying to reshape my neural network by doing one legged hang cleans. In the exercise I have to shrug a large amount of weight off one leg in a lunging position, get under the weight in mid air and catch it as it comes down in the same position. It is difficult to catch the weight without landing on the ball of my foot, which is pleasantly placed directly under my hips, making my body develop the correct foot placement as a reflex. This learning is actually the reshaping of the network of neurons inside my brain that deal with motor coordination as they make new interactions, destroy old ones, change their amplification of signals, or change their functions completely. At any rate, I haven’t even scratched the surface of how intertwined the processes are that go inside this skull of mine to create who I am and the things that I do. But I do find the little I know pretty amazing, and can only hope that my non-declarative memory will eventually kick in.
To see the proper running form, take a look at Michael Johnson in his world record 200m race.at the 1996 olympics.

I found an article about new brain cells that I thought was really interesting. Researchers at the Yale School of Medicine discovered the mechanism behind how new neural cells are integrated into the adult brain. It turns out that new neural cells take a while to mature and fully integrate themselves into existing neural networks in the brain. While they are maturing, they rely on signals from other brain regions so that they do not disturb ongoing functions of the brain. They can receive input from these other regions for up to 10 days before they are ready to make any of their own outputs. So how long does it take to fully develop their synaptic connections so that they can talk to one another? Up to 3 weeks.

So why do we care; what is significant about this discovery? This mechanism sheds light on how neural cells integrate themselves into existing networks, which will impact how stem cells are used to replace neurons lost to injury or disease. The main concern is about neurons firing inappropriately, which could cause seizures or cognitive dysfunction.

The full article can be found in the Journal of Neuroscience, Vol. 27