Pallacken Abdul Wahid is back!

You just can’t shut this crank up. You may recall that he earlier published a paper in an Elsevier journal claiming that all of genetics is wrong, oh, and by the way, the Quran and Bible are right because chromosomes look like ribs. He has a new paper out (only it’s actually the same old word salad, freshly tossed), Molecular genetic program (genome) contrasted against non-molecular invisible biosoftware in the light of the Quran and the Bible.

The current perception of biological information as encoded by a chemical structure (genome) is critically examined. Many features assigned to the genome are violations of chemical fundamentals. Perhaps the most striking one is that a living cell and its dead counterpart are materially identical, i.e., in both of them all the structures including genome are intact. But yet the dead cell does not show any sign of bioactivity. This clearly shows that the genome does not constitute the biological program of an organism (a biocomputer or a biorobot) and is hence not the cause of “life”. The molecular gene and genome concepts are therefore wrong and scientifically untenable. On the other hand, the Scriptural revelation of the non-molecular biosoftware (the soul) explains the phenomenon of life in its entirety. The computer model of organism also helps understand the Biblical metaphor “Adam’s rib” as chromosome, the biomemory of the cell. The Quran provides ample insight into the phenomenon of human biodiversification. It also reveals the source of biological information required for creating biodiversity in human population. The Scriptural revelation of the invisible non-molecular nature of biosoftware rules out the possibility of creating life from chemical molecules without involving a living cell (or organism) in the process. Claims of creation of “synthetic life” or “synthetic forms of life” employing living cell in the process cannot be accepted as creation of life from non-life as non-molecular biosoftware can be copied from the living cell to the prosthetic cell. Instead of chemically synthesizing a cell from scratch to prove life is a material phenomenon, biologists can as well resort to a more practical and convincing method by restoring life to a dead cell (which carries all the hardware structures including the genome but lacks the biosoftware) by chemical means. The failure of experiments to produce life through purely chemical means or to restore life to a dead cell would in fact invalidate the molecular biological program (genome) concept. More importantly, the failure would confirm the Scriptural revelation of non-particulate nature of the divine biosoftware and the existence of God.

It’s nonsense through and through, and it’s even recycled nonsense — there’s nothing new in here that you can’t find in his previous paper from Bizarro land, except this one seems to emphasize his claim that the impossibility of restarting a dead cell proves the existence of a creator.

The man is a flaming crackpot, but the real shame here is that he is regularly getting published, even if it is in bottom-tier journals. This one was in “Advances in Bioscience and Biotechnology“, which bills itself as an international journal of bioscience, very broadly defined. I suspect it’s a money-making racket. It says “A fee will be charged to cover the publication cost” (which is not at all unusual in science, and many of the very best journals charge a page fee to authors), but it also says the papers “are subject to a rigorous and fair peer-review process”, a claim clearly given the lie by Mr Wahid. This is a paper that could not have survived a cursory glance, let alone a rigorous review.

Now I’m thinking about getting a tattoo

Blasphemy laws have some novel consequences. Take the case of this devout fellow who uses his name as a legal weapon.

Pakistani authorities have arrested a doctor on suspicion of violating the country’s contentious blasphemy law by throwing away a business card of a man who shared the name of Islam’s prophet, Muhammad, police said Sunday.

The case began Friday when Muhammad Faizan, a pharmaceutical company representative, visited Valiyani’s clinic and handed out his business card. He said when the doctor threw the card away, Faizan went to police and filed a complaint that noted his name was the same as the prophet’s.

If mere business cards with a holy name written on them must be treated with reverence and respect, well, I’m just going to have to get my favorite body parts tattooed with the names of gods and prophets. I’m goin’ for the full Muhammad…I’m afraid a cowardly weenie like Mr Faizan is out of luck, and will have to settle for “Mu”.

The War on Christmas opens a new front

It’s escalating. Now it’s not just defending Jesus, it’s about…well, you’d be surprised.

The West Village YMCA in NY is replacing Santa Claus with Frosty the Snowman. Guess who’s mad about that now? Bill Donohue:

“Christmas is not about Jack Frost; it’s not about snowmen,” fumed Bill Donohue of the Catholic League.

“We’re not talking about some secular organization that has no religious roots. If they can’t celebrate Christmas, then they should check out. What a bunch of cowards.”

Hey, Bill! It’s not called Santamas, you know.

My mouse has two daddies

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This is awesome news. Biologists have figured out how to enable two male mice to have babies together, with no genetic contribution from a female mouse. I, for one, look forward to our future gay rodent overlords.

It was a clever piece of work. Getting progeny from two male parents has a couple of difficulties. One is that you need an oocyte, which is a large, specialized, complex cell type, and males don’t make them. Not at all. You can tear a boy mouse to pieces looking for one, and you won’t find a single example—they’re a cell found exclusively in female ovaries.

Now you might think that all we’d have to do is grab one from a female mouse, throw out its nuclear contents, and inject a male nucleus into it, but that doesn’t work, either. The second problem is that during the maturation of the oocyte, the DNA has to be imprinted, that is, given a female-specific pattern of activation and inactivation of genes. If that isn’t done, there will be a genetic imbalance at fertilization, and development will be abnormal. What we need to be able to do is grow an oocyte progenitor with male DNA in a female ovary.

So that’s what was done, and here’s how.

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Start with Father #1, whose cells all contain an X and a Y chromosome. Connective tissue cells were extracted from the mouse (in this case, an embryo), and then reprogrammed by viral transduction with modified copies of the genes Pou5f1, Sox2, Klf4, and Myc. This step produces induced pluripotent stem cells (iPS cells), or cells that have the ability to develop into all (probably) of the tissues of the body. These cells are then grown in a dish.

The next step is to give Father #1’s cells a sex change operation. This turns out to be trivial: in culture, cells can spontaneously lose a chromosome by non-disjunction, and 1-3% of the cells will lose their Y chromosome, and convert to X0. No Y chromosome means it is now a functionally female cell.

There is a significant difference between humans and mice here. Sometimes (about 1 in 5,000 births) humans are born with only one X chromosome, a condition called Turner syndrome. These individuals appear to be entirely normal females, except for some minor cosmetic differences, an unfortunate predisposition to a few problems like heart disease, and of particular relevance here, are also sterile. Mice are different: Turner syndrome mice are fertile. Apparently, mice have a god-given edge in the gay reproduction race.

Once a population of Father #1’s cells that are X0 are identified, they are then injected into a female mouse blastocyst to produce a chimera, an embryo with a mix of host cells (which are genetically XX) and donor cells (which are X0). That they’re mixed together in the resulting offspring doesn’t matter; it may be a callous way of looking at it, but the only purpose of the host XX cells is to provide a female mouse environment to house Father #1’s X0 cells that end up in the ovaries.

That’s the result of all this tinkering: a female mouse is born with a subset of Father #1’s reprogrammed cells nestled in her ovaries, where they mature in a female body and differentiate into oocytes. The oocytes divide by meiosis, producing egg cells that contain either one X chromosome, or no sex chromosome at all (0).

Finally, Father #2 comes into the picture. Father #2 is an ordinary male, with testes containing cells that go through meiosis and mature into ordinary sperm containing either one X chromosome or one Y chromosome. These sperm are used to fertilize eggs from the chimeric female, which, by all the shenanigans describe above, are derived from Father #1. Both male (XY) and female (X0) progeny ensue. That this actually occurred was thoroughly confirmed by testing the progeny for genetic markers from both fathers…and it’s true. The only genetic contributions were from the dads, and nothing from the host mother.

Now you may be sitting at home with your dearly beloved gay partner and wondering whether you will be able to have babies together someday. Or perhaps you’re a narcissistic man sitting at home alone, thinking you’d like to have babies with yourself, if only you could convince a few of your cells to make eggs (this is another possibility: there is no barrier to this technique being applied in cases where Father #1 is also Father #2, except that it is incestuous to the max). I expect it will be possible someday, but it isn’t right now. There are a few obstacles to doing this in humans.

  1. We haven’t worked out that genetic reprogramming trick for humans yet, so we don’t have a technique for producing pluripotent stem cells from your somatic cells. Give it time, though, and keep funding adult stem cell research, and it’ll happen.

    Also note the rule of unintended consequences. The fundy fanatics have been anti-embryonic stem cell research for years, and one of their tactics has been to insist that adult stem cell research is far more important. In the long run, it is…and oh, look what we’ll be able to do!

  2. The reprogramming trick involves viral transfection, the insertion of mutant copies of a few specific genes. This is probably not desirable. All kids are mutant anyway, but this is adding a specific, constant kind of mutation to all of the individuals produced by this method.

  3. It still requires a woman, and a woman who has been embryonically modified as a blastocyst at that. Did you know women have rights, including the right to not be a vessel for a scientific experiment? It’s true. They also take years and years to grow to sexual maturity, so even if you got started right now it would be a dozen years before she started making oocytes for you, and by the way, she’d inform you that she only produces eggs for herself, not you.

    There may be ways around this, but the techniques aren’t here yet. To produce eggs, we really don’t need the whole woman, just the ovary: another goal of stem cell research is to regrow organs from cells in a dish, for instance to build a new heart or pancreas for transplantation. Consider ovaries on the list of organs.

  4. That difference between mice and humans, that X0 mice are fertile while X0 women are not, seems like a serious problem. We apparently need the pair of X chromosomes working together to provide the correct gene dosage for normal maturation of the egg. It just means that we need to add an extra step to the procedure for people, though: transfer by injection an extra X chromosome from a donor cell from Father #1 to the X0 cells, producing a composite XX cell derived entirely from a male.

  5. The fundies will go raving apeshit bonkers. So what else is new?

  6. OK, there are also some serious ethical concerns that would need to be worked out, independent of the Bible-thumping theocratic sex police. As you can see from the recipe above, this is a procedure that involves extensive manipulation of embryos, almost all of it experimental, and the end result is…a baby. We should be conscientious in our care in any procedure that can produce human beings, especially if there is risk of producing damaged human beings. This can also only be categorized as a kind of expensive luxury treatment, and it’s difficult to justify such elaborate work for solely egotistical gratification. Especially for you, nerd-boy masturbating alone at home. (But learning more about the mechanisms of reproduction is more than enough to justify this work in mice, at least).

Wait…all this is just for male gay couples. What about nurturing lesbians who want to have children together? That has another tricky problem: you need a Y chromosome to induce normal sperm differentiation, and lesbian couples don’t have any of those. At all. They’re going to have to go to a male donor for a genetic contribution, diluting the purity of the genetic side of the procedure. However, that has a technology in the works to help out already: see obstacle #4 above. We’ll have to isolate iPS cells from Mother #1, inject a donor Y chromosome into them, cultivate chimeric male (or chimeric testis in a dish) to produce sperm, and then fertilize eggs from Mother #2 with the Mother #1-derived sperm. Any sons produced by this procedure would have three parents, Mother #1, Mother #2, and the Male Donor who provided the Y chromosome, and only the Y chromosome. Any daughters, though, would only have two parents: Mother #1 and Mother #2.

Isn’t reproductive biology fun? It’s the combination of exciting science with terrifyingly deep social implications.


Deng JM, Satoh K, Chang H, Zhang Z, Stewart MD, Wang H, Cooney AJ, Behringer RR (2010) Generation of viable male and female mice from two fathers. Biology of Reproduction DOI:10.1095/biolreprod.110.088831.

Another “sovereign state” affected by Wikileaks

This time, it’s the Vatican. Wikileaks has released documents related to the Irish priest scandals.

Pope Benedict refused to allow Vatican officials to testify in an investigation by an Irish commission into alleged child sex abuse by priests, according to U.S. diplomatic cables released by WikiLeaks, The Guardian newspaper reported.

Benedict was also reportedly furious when Vatican officials were called upon in Rome, The Guardian reported Saturday.

The Murphy Commission of Inquiry into sexual and physical abuse “offended many in the Vatican,” according to a cable dated February 26, 2010.

No surprises. The Pope was more concerned about his little city-state than he was about the kids.

Oh, also…the Irish government caved in to the Catholics.

The Irish government, meanwhile, wanted “to be seen as co-operating with the investigation” because its churches and education department were also involved in the scandal.

The Irish ambassador’s deputy, Helena Keleher, told U.S. diplomats that her government eventually acquiesced to the Vatican and granted their officials immunity from testifying, the Guardian reported.

The testimony they did get was damning…how much worse was the situation? We won’t know, because the Vatican did its best to cover up the story.

Sokaling integrative medicine

Funny business, this. Professor John McLachlan corresponded with the organizers of an international conference on integrative medicine, proposing some very peculiar ideas that he wanted to present. They were…intrigued. They asked him to flesh out his concepts in a formal abstract so that they could evaluate whether they were worthy of inclusion in their prestigious meeting, so he did, and here it is.

Abstract

Intensive study of the development of early human embryos indicates that there is a reflexology style homunculus represented in the human body, over the area of the buttocks. This homunculus corresponds to areas of clonal expansion (“Blaschko lines*”), in which compartments of the body have clear ontological relationships with corresponding areas of the posterior flanks. The homunculus is inverted, such that the head is represented in the inferior position, the left buttock corresponds to the right hand side of the body, and the lateral aspect is represented medially. The Blaschko lines mediate energy flows to parent areas, and lead to significant responses to appropriate stimuli. As with reflexology, the “map” responds to needling, as in acupuncture, and to gentle suction, such as cupping. Responses are stronger and of more therapeutic value than those of auricular or conventional reflexology. In some cases, the map can be used for diagnostic purposes. In both therapeutic and diagnostic interventions, a full case history must be taken, in order to define the best methods of treatment. In the presentation, anonymised case histories, “testimonies” and positive outcomes will be presented. The methodology does not lend itself to randomised double blind controlled trials, for obvious reasons.

Obviously, the involvement of a sensitive area of the body poses special challenges. Ethical practice is of significant concern. Informed consent must be obtained from all patients in writing, before either therapeutic or diagnostic procedures are commenced. Although exposure of the gluteal region is recommended, procedures can be carried out using draping if this is required in order to gain patient cooperation. Chaperones or same sex practitioners are recommended in the case of female patients.

Unfortunately, this novel paradigm may meet with closed minds and automatic rejection. Patience and understanding of “closed” mindsets is essential in order to advance this new discovery in a way commensurate with its importance.

*See for example http://dermnetnz.org/pathology/blaschko-lines.html.

I’m deeply disappointed that he didn’t cite my article on Blaschko’s lines, but despite the absence of a boost from my notoriety (OK, maybe it helped that he didn’t mention me), the committee pondered and pondered the obvious rubbish scribbled above, and accepted the presentation. Unfortunately, McLachlan has chickened out and decided not to travel to Jerusalem to stand in front of a bunch of quacks and babble out more nonsense in the same vein. It’s a shame! It would have been so easy — it’s not as if he’d have to actually collect any data.

Besides, I’d really like to see therapeutic ass-cupping become a common alternative medicine practice.