What I taught in the development lab today

After our disastrous chick lab — it turns out that getting fertilized chicken eggs shipped to remote Morris, Minnesota during a blizzard is a formula for generating dead embryos — the final developmental biology lab for the semester is an easy one. I lectured the students on structuralism and how there are more to cells then genes (there’s also cytoplasm and membranes and environment) earlier today. This afternnon I’ve given them recipes for soap bubble solution and told them to play. They’re supposedly making little model multicellular organisms by chaining soap bubbles together, and observing how the membranes follow rules of organization just like the ones we see in living tissue.

In case you’re wondering what the recipe is so you can do it too, here’s my bubble soap formula:

  • 5ml Dawn dishwashing soap

  • 100ml DI water

  • 1ml glycerine

It gets better as it ages — there are perfumes and a small amount of alcohol solvent in the dishwashing liquid which evaporate off with time. The students are playing with concentrations, and if you’re making it up fresh and don’t want to wait until tomorrow, you can increase the concentrations of soap and glycerine.

The more glycerine you add, the more long-lasting the bubbles are…and unfortunately, the heavier they are. If you want bubbles that will waft gently on the breeze, you’ll want less glycerine. It’s a very forgiving recipe, just play.

I’ve also provided the students with a couple of books: the classic Soap Bubbles: Their Colors and Forces Which Mold Them by C.V. Boys, and The Science of Soap Films and Soap Bubbles by Cyril Isenberg. They’re more about math and physics, but they have some nice illustrations. These are projects you can do at home with cheap ingredients bought at the grocery store, so those of you with kids might try playing with it this summer. There are simple rules about the angles of intersection between bubbles — if you’re mathematically inclined, take pictures and use a protractor and see if you can work them out. There’s also some really cool stuff going on with colors, since the bubbles have a gradient of thickness from top to bottom and you get wonderful colors caused by refraction and reflection and phase shifts across the membrane.

OK, if you don’t have kids, you have my permission to play with soap bubbles, too. Tell everyone who looks at you funny that you’re doing Science!

You don’t have pockets?

OK, OK, OK…I’m oblivious, but I never realized this before, or thought about the consequences: a lot of women’s clothes don’t have pockets. That would be an intolerable state of affairs for me. Don’t most boys grow up like me with a bunch of pockets that they’re constantly stuffing things into? Candy bars, interesting rocks, pocket knives, frogs, earthworms…until they grow up and replace the cool stuff with boring junk like keys and loose change and wallets. Even now I like a suit jacket with a couple of outside pockets and four in the lining, and I usually come home from a trip with all six stuffed with something or other.

I actually appraise my apparel for the number of pockets it has in it. If I’m wearing a shirt that doesn’t have a breast pocket (which I consider an abomination and a crime against utility already), I pick a coat that has an extra pocket to compensate.

Ladies, doesn’t it warp your brain to have grown up without built in stashing places to nurture your natural acquisitiveness? I’m going to have to have a conversation with my wife about this. I’ve noticed that every time we leave the house together, she always ask me if I have my keys, and I always thought it weird. Of course I have my keys! I always keep my keys right there in my pocket, and the only way I’d leave the house without them is if I forgot to put my pants on.

But now it’s sinking in. She’d only have her keys if she brought her purse with her. Hmmm. Teeny-tiny light bulb flickers and begins to glow dimly in my cranium…


pocketses

For the doubters: this is a view of the inside lining of my suit coat, opened in classic flasher’s pose. The top pocket is big enough to stuff my whole hand in; it’s got a bunch of colored pens in there right now, but at meetings I’ll usually fold the program in half and put it in there, or when I’m traveling I’ll put my itinerary there. The bottom pocket is smaller, but still large enough for my cell phone and a bunch of business cards. And the right side lining has the same arrangement! Little do people realize as I stride through meetings that I’m like Batman, with all kinds of useful things tucked away in my clothing.

Bad laws for science and all growing things

Now it’s getting personal. When the Republicans were just dedicated to making the poor poorer and the rich richer, I could shrug it off. When they kept arguing for the righteousness of bombing foreigners (well, Democrats do that too), I could console myself that they weren’t bombing me, yet.

But now they’re aiming to destroy science in the US, and I have to complain.

The legislation, being worked up by Representative Lamar Smith (R-TX), represents the latest-and bluntest-attack on NSF by congressional Republicans seeking to halt what they believe is frivolous and wasteful research being funded in the social sciences. Last month Senator Tom Coburn (R-OK) successfully attached language to a 2013 spending bill that prohibits NSF from funding any political science research for the rest of the fiscal year unless its director certifies that it pertains to economic development or national security. Smith’s draft bill, called the "High Quality Research Act," would apply similar language to NSF’s entire research portfolio across all the disciplines it supports.

Oh, the “High Quality Research Act”…given the Republican’s fondness for giving their bills the most misleading names possible, we already know this intends the opposite.

What they intend to do is write patriotism into the funding of science. Our work most promote AMERICA, and also must be of utmost importance, where importance is to be defined by Texas a-holes in shitkickers and big ol’ cowboy hats, who probably don’t care much for them fruit flies.

1) "…in the interests of the United States to advance the national health, prosperity, or welfare, and to secure the national defense by promoting the progress of science;

2) "… the finest quality, is groundbreaking, and answers questions or solves problems that are of utmost importance to society at large; and

3) "…not duplicative of other research projects being funded by the Foundation or other Federal science agencies."

If the Republicans really want to start a brain drain, pass that bill. Great way to poison science.

Oh, and yeah, I also hate what they’ve done to both domestic and foreign policy. Is there anything Republicans do that is less than soul-destroying evil?

What I taught today: a send-off with an assignment

Today was the last day I lecture at my developmental biology students. We have one more lab and one final class hour which will be all about assessment, but this was my last chance to pontificate at them…so I told them about all the things I didn’t teach them, and gave them a reading list for the summer. (I know, there’s no way they’re going to take these to the beach, but maybe when they move on in their careers they’ll remember that little reference in their notes and look it up.)

So here are the books I told them to go read.

We’ve been all up in the evo-devo house this semester, so I urged them to read the antidote, just to get some perspective. This is the great big book all the grown-up developmental biologists read and admire and regard as gloriously wrong in many ways, but still an important reminder that physical and chemical properties of whole cells and organisms matter — it’s not all genes. And of course that legendary book is On Growth and Form by D’Arcy Wentworth Thompson. I tell all my students that if ever they want to get serious about developmental biology, they must read Thompson.

For the more modern gang who like computers and math and logic puzzles, I point them at At Home in the Universe: The Search for the Laws of Self-Organization and Complexity and The Origins of Order: Self-Organization and Selection in Evolution by Stuart A. Kauffman. He’d really benefit from more time in a wet lab, but still, there’s some very provocative stuff in those books about how complexity can spontaneously arise. I also gave them a bit of an introduction to NK network theory.

There is always a philosopher or two in the class, so for them I suggest that they read The Ontogeny of Information: Developmental Systems and Evolution by Susan Oyama. Developmental Systems Theory suffers for its lack of applicability — it really is a little too abstract for most scientists — but I love it for its more holistic approach to development.

For the hardcore biologists, the ones who are ready to read a book where every page makes them think very hard, I suggest Developmental Plasticity and Evolution by Mary Jane West-Eberhard. It’s quite possibly the most brilliant book I’ve ever read, but it’s dense and challenging. Intentionally challenging: she really does question a lot of the dogma of evolutionary and developmental biology, and forces you to realize there are a lot of wide-open, intensely interesting questions out there.

And finally, I brought up a book I seriously think about making the class text every year, Ecological Developmental Biology by Scott F. Gilbert and David Epel. The course as it is now is a fairly traditional modern molecular genetics and development class, with a solid overlay of evolutionary biology. The Gilbert and Epel book integrates all that with ecology — and I firmly believe that the well-rounded biologist of the type a liberal arts university tries to generate ought to have a balanced conceptual understanding of ecology, development, and evolution.

That’s the short list. It’s too bad I don’t have total control of my students’ lives, or I’d have them studying ten or twenty books over the summer. Or they probably think it’s a good thing I don’t.

Best response to the Aquatic Ape nonsense yet

Mockery is good. Behold the #spaceape hypothesis: humans clearly evolved in outer space!

#SPACEAPE

Basic Arguments of the Space Ape Theory:

1. we have evolved big brains relative to our bodies because we don’t need our bodies to move around in space.

2. we don’t have much body hair because what would be the point of a few more follicles worth in 2.73 Kelvin (-270 Celsius)?

3. sinuses, far from being evolutionary spandrels, are little miniature internal space helmets.

4. our outsize eyes clearly show our relation to other species in space.

It’s taking off on Twitter, too. Next time someone brings up the soggy monkey story, I’m just going to reply with “Space Ape!”

Still waiting for the ID revolution

Hey, boys and girls, does anyone remember the IDEA clubs? IDEA was short for Intelligent Design and Evolution Awareness, and the plan was that they’d form all these advocacy groups at universities all over the country, and from there, take over the world! It was going to be a REVOLUTION…one driven by dishonest, conservative Christians who wanted to roll back the progressive agenda and install a devout theocracy in its place.

joinrevolution_sm

The IDEA club is where Casey Luskin got his reputation as a diligent little gerbil for the cause. He was one of the founders of the model organization at UC San Diego, which is highlighted on the main IDEA Center club page. Amusingly, it’s a dead link now.

Likewise, if you read the various blurbs on that site, there are ever-shifting numbers of these clubs around: they claim a high of 35 worldwide, and have a pull-down menu listing them all, but you will click in vain — it doesn’t work, and the links go nowhere. Elsewhere, they say they’ve got 25 active clubs, but at the bottom of the page there are a collection of links to them…they’ve got 10. All of them lead to empty placeholder pages on the IDEA center site, except one, which futilely tries to take you to a defunct Geocities site.

It’s a dismal and empty virtual ghost town. Visit it and listen carefully and you might hear the sad sighs of creationists long gone, and maybe occasionally the cackling, triumphant laughter of a rational human being passing by to gaze on the fading works of intelligent design, and gloat.

Meanwhile, the Secular Student Alliance has been booming, with 378 groups. The links actually work on their page.

Make the comparison. It’s clear where the momentum lies.

The mysterious Tatsuya Ishida

oppressed

He’s an invisible webcomic artist — here’s one of the rare interviews with the guy, and a review of his work. I’ve been following him for many years, and one of the interesting things you can see as he matured is that he’s gone from drawing pimp ninjas and geisha sluts to developing a very feminist sensibility.

Look at his latest, for instance — no words at all, but he still gets across regret at what patriarchal culture has done.

There’s been a striking transformation going on. I’d really like to hear in his own words what’s going on through his head…but his art seems to be doing a fine job of communicating.

Pre-emptive announcement

I’m going to be at Women in Secularism in a few weeks, which I expect to be great. However, certain nuisances are talking about approaching the people they’ve been harassing online for years, and trying to harass them in real life, getting them to be grist for their podcast mill. Ophelia has made a clear declaration:

Ok this is specifically for Vacula: do not approach me at WiS2. Stay away from me.

That goes for me, too. If you’ve been nattering away on twitter & podcasts & blogs about how evil I am, how useless feminism is, and how much you hate freethoughtblogs in general, we have no grounds for any conversation, so stay the hell away from me. I won’t bother you, you won’t bother me.

I won’t be exchanging a single word with Vacula, or any of his fellow travelers.

I think there’ll be more than enough intelligent, interesting people to have conversations with at this meeting, the dross can just stay away.