A zebrafish timelapse recording

At my talk on Tuesday, the centerpiece was a short movie of zebrafish development—I was trying to show just how amazingly cool the process was. People seemed to like that part of the show, at least, so I thought I’d try to figure out this YouTube doohickey and upload it for general viewing. So here it is, a timelapse recording of about 18 hours of zebrafish embryology compressed into 48 seconds:

I’ve got more, and my students will be making videos of their own soon enough, so maybe I’ll try uploading some other stuff soon. I’m discovering that YouTube is a little tricky about the aspect ratio, and the conversions do add some distracting compression artifacts to the movie…I may have to tinker quite a bit to get a more satisfactory image.

Squid Hox genes

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It’s April (not anymore—it’s September as I repost this), it’s Minnesota, and it’s snowing here (not yet, but soon enough). On days like this (who am I fooling? Every day!), my thoughts turn to spicy, garlicky delicacies and warm, sunny days on a lovely tropical reef—it’s a squiddy day, in other words, and I’ve got a double-dose of squidblogging on this Friday afternoon, with one article on the vampire squid, Vampyroteuthis infernalis, and this one, on squid evolution and cephalopod Hox genes.

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Evolution of alcohol synthesis

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We need to appreciate beer more. Alcohol has a long history in human affairs, and has been important in purifying and preserving food and drink, and in making our parties livelier. We owe it all to a tiny little microorganism, Saccharomyces cerevisiae, which converts complex plant sugars into smaller, simpler, more socially potent molecules of ethanol. This is a remarkable process that seems to be entirely to our benefit (it has even been argued that beer is proof of the existence of God*), but recent research has shown that the little buggers do it all entirely for their own selfish reasons, and they’ve been busily making alcohol that has gone undrunk by humankind for tens of millions of years.

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How to dismantle a body

Don’t be too grossed out, but the University of Wisconsin Madison has put a whole series of high-quality videos of human dissection online. It’s extremely cool, but not for the squeamish—there’s more than just the sight of a cadaver getting hacked up, and the sound of a saw on bone or a chisel being used to peel up the cranium are, ummm, memorable. At least you’re spared the odor and the textures.

I’d almost forgotten how muscular gross anatomy is—it takes some heft and brute force to take apart a body.

(via Mind Hacks)

Palaeos reborn!

First I reported that Palaeos was lost, and then that it might be found, but now it looks like we can safely say it is being reborn. The old version of Palaeos has been at least partially restored, but the really important news is that a Palaeos wiki has been set up and people are working on reassembling old content and creating new information in a much more flexible format. If you’ve got some phylogenetic or palaeontological expertise, you might want to consider joining the Palaeos team and helping out with this big project.

3.3 million years old, 3 years old

Say hello to Selam, or DIK-1-1, a new and very well preserved member of the family discovered in Dikika, Ethiopia. She belongs to the species Australopithicus afarensis and is being called Lucy’s little sister.

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She was only a toddler when she died about 3.3 million years ago, and from the teeth the authors estimate that she was about 3 years old. Most of the skeleton is intact, but doesn’t seem to have yet been fully extracted from the matrix.

Some of the surprises: the hyoid bone is chimpanzee-like, and implies chimp-like vocalization abilities. She had a long way to go before she could have a conversation. The fingers are long and curved, and the scapula is more gorilla-like than ours; there is a suggestion of better arboreal ability than we have.

Alemseged Z, Spoor F, Kimbel WH, Bobe R, Geraads D, Reed D, Wynn JG (2006) A juvenile early hominin skeleton from Dikika, Ethiopia. Nature 443:296-301.