Strangely, my salary has not been following the same trajectory

Minnesota tuition rates have also been skyrocketing. My salary has been creeping upward at single digit percentage rates — low single digits, and we also had a freeze for a few years — and also, we haven’t been hiring swarms of new faculty, but only replacing retiring faculty (which, by the way, immediately reduces salary expenses). Why is this happening?

i-a30658fb4b920637d35cace08006c635-tuition.jpeg

The answer is easy: state governments have been jettisoning their responsibilities and not paying for the educational institutions earlier, wiser generations invested in. Thank you, Republicans, the party of irresponsible spendthrifts, for coasting on the infrastructure built up 50 years ago, and letting it decay now.

(Also on FtB)

Science overwhelmed by self-defeating awe

This video by Alexander Tsiaras is simultaneously lovely and infuriating; it’s a product of technology and science, and the narration is profoundly anti-science.

There are some technical issues that annoy me about the video — it’s a mix of real imagery and computer animation, and it doesn’t draw a line between what is observed and what is fabricated — but it’s visually stunning and otherwise fairly accurate.

But Tsiaras’s running commentary…it’s mystical airy-fairy glop. It takes awe and turns it into a celebration of ignorance.

Even though I am a mathematician, I look at this with marvel of how do these instruction sets not make these mistakes as they build what is us? It’s a mystery, it’s magic, it’s divinity. Then you start to take a look at adult life. Take a look at this little tuft of capillaries. It’s just a tiny sub-substructure, microscopic. But basically by the time you’re nine months and you’re given birth, you have almost 60,000 miles of vessels inside your body. I mean, and only one mile is visible. 59,999 miles that are basically bringing nutrients and taking waste away. The complexity of building that within a single system is, again, beyond any comprehension or any existing mathematics today.

And that instruction set, from the brain to every other part of the body — look at the complexity of the folding. Where does this intelligence of knowing that a fold can actually hold more information, so as you actually watch the baby’s brain grow — and this is one of the things that we’re doing right now. We’re actually doing the launch of two new studies of actually scanning babies’ brains from the moment they’re born. Every six months until they’re six years old — we’re going to be doing actually to about 250 children — watching exactly how the gyri and the sulci of the brains fold to see how this magnificent development actually turns into memories and the marvel that is us.

And it’s not just our own existence, but how does the woman’s body understand to have genetic structure that not only builds her own, but then has the understanding that allows her to become a walking immunological, cardiovascular system that basically is a mobile system that can actually nurture, treat this child with a kind of marvel that is beyond, again, our comprehension — the magic that is existence, that is us?

It’s not magic, and it’s sure as hell not divinity — it’s chemistry. And it certainly does make mistakes: half of all conceptions end in a spontaneous abortion, and about 15% of all pregnancies where the mother knows she is pregnant spontaneously terminate.

I genuinely despise the tactic so widely used by intelligent design creationists, and here by Tsiaris, of reciting really big numbers and babbling about complexity, complexity, complexity. Yes, it’s complicated. But you can build complicated structures with simple rules, and if you look at these systems, what you find are iterative properties and variation induced by local conditions. And if it’s beyond mathematics today, what are all those mathematicians and biologists doing modeling angiogensis?

And then there’s the rampant assignment of agency to everything. “Where does this intelligence of knowing that a fold can actually hold more information” in the brain come from? It doesn’t. The expansion of the cortex is a consequence of selected variation in mitotic regulators for that region of the brain — it expands like bread dough because the cells are replicating to large numbers, and the confines of the skull cause it to buckle and fold. It’s neurogenesis; there aren’t little angels folding pastry in there.

That entire last paragraph beginning from “how does the woman’s body understand to have genetic structure” is total nonsense. The answer is no, the woman’s body does not “understand”. There is no “knowing” there. There are physical/chemical processes guided by a molecular biology that has been shaped by a few billion years of variation and selection to produce a functional outcome. It’s not magic. It’s not guided by intelligence and intent.

THIS. IS. BIOLOGY.

Yet here is this intelligent, accomplished, technically skilled loon painting it with useless, mystical, misleading bullshit.

That kind of delusion has consequences. Right now, that video is getting featured on anti-maternal-life websites all over the internet. Here’s a self-selected sample of responses to Tsiaras’s work:

“For you created my inmost being; you knit me together in my mother’s womb.”

“Pro-choicers vanquished by Science.”

“This truly is amazing.”

“How could anyone get an abortion after watching this?”

“To say that this is a must see or fantastic is an understatement of the truth.”

I am most amused by the claim “Pro-choicers vanquished by Science.” I’ve been familiar with the developmental series shown in that video for about 30 years, and it confirms to me that there is nothing magical or special about human development that demands that we privilege the human embryo as deserving the full rights of an adult, aware, thinking person. It is meat in motion, driven by unthinking processes. Cow embryos go through the same events, and through the first month or so would be indistinguishable from a human embryo; does this somehow compel the anti-woman brigade to shun steaks?

Here, I have a video of zebrafish development. I don’t have all the gadgets and animation tools that Tsiaras has at his disposal, just a microscope, a video camera, and Quicktime software, but still…this truly is amazing. It’s a must see or fantastic.

Wow. How did a fish embryo know how to do that?

The answer is that it doesn’t. We don’t grant human beings a privileged place in our cultural ethics because they develop from embryos, or because they have a heart that beats with many miles of capillaries, or because we don’t understand every minuscule detail of their formation. If that were the case, the anti-choicers would have to be rushing to protect the fruit flies growing on the bananas in their kitchen and be picketing the battery farms producing chicken eggs. Witnessing development shouldn’t turn rational people into irrational knee-jerk defenders of embryos…it should turn them into developmental biologists who are awed at the grandeur of growth and differentiation, who will spend their lives working to figure out how it all works.

Where Tsiaras sees ineffable unapproachable mystery, I see interesting problems to be solved.

(Also on FtB)

Strangely, my salary has not been following the same trajectory

Minnesota tuition rates have also been skyrocketing. My salary has been creeping upward at single digit percentage rates — low single digits, and we also had a freeze for a few years — and also, we haven’t been hiring swarms of new faculty, but only replacing retiring faculty (which, by the way, immediately reduces salary expenses). Why is this happening?

The answer is easy: state governments have been jettisoning their responsibilities and not paying for the educational institutions earlier, wiser generations invested in. Thank you, Republicans, the party of irresponsible spendthrifts, for coasting on the infrastructure built up 50 years ago, and letting it decay now.

(Also on Sb)

Science overwhelmed by self-defeating awe

This video by Alexander Tsiaras is simultaneously lovely and infuriating; it’s a product of technology and science, and the narration is profoundly anti-science.

There are some technical issues that annoy me about the video — it’s a mix of real imagery and computer animation, and it doesn’t draw a line between what is observed and what is fabricated — but it’s visually stunning and otherwise fairly accurate.

But Tsiaras’s running commentary…it’s mystical airy-fairy glop. It takes awe and turns it into a celebration of ignorance.

[Read more…]

Why I am an atheist – Michael Baizley

Between making a couple videos on the Creation Museum following the 2009 trip to the Creation Museum with the SSA and running the largest atheism group on Facebook with 10,000 members, I believe I have question to answer: why I am an atheist.

I suppose it begins with nothing short of nature itself. I grew up in the hills of Kentucky. I shan’t hesitate to say that the hills of Kentucky are a lovely place – in stark contrast to everything else in Kentucky, which is pretty much the exact opposite of lovely. I spent plenty of time in the wilderness, observing the various forms of life, taking in the smells and the sounds, laying down and watching the sky. It was always regrettable when I had to put down the science books as a young child to attend the churches, which never felt quite right to me. Regardless of what I was told, something was critically wrong with the things they said. The loving Jesus message was nice, but the not-so-loving message of hell seemed a drastic affront to the idea of love.

The explanation that a loving Lord would punish people like me, who had done no other wrong than existing or doubting, seemed contrived, to say the least.

My parents were loyal southern Baptists and still are. One morning in my youth, prior to the age of ten, I was looking out our sliding doors, taking in the amazing sights of a Sunday morning. The birds could be heard loudly chirping, deer could be heard walking the hills, the sun was just about to break free from the hills and show itself to everyone. My admiration of nature’s overwhelming beauty was thoroughly broken when my father leaned a hand against the glass and mentioned some jazz about the beauty of god’s creation. Of course, something about the beauty of god’s creation seemed off. In my time, I had found dead birds, miscellaneous animal carcasses in the woods, and seen with my own eyes bugs fighting it out as a matter of life and death.

God’s creation, while beautiful, also struck me at times as particularly brutal and outright dangerous, depending on what you are. As a human, you don’t have many problems – bears and snakes – but as an animal or insect, you had a great many problems day by day. The contrast of such striking beauty with suck striking brutality was not, and is not, lost on me. Quite the opposite: there was more brutality than beauty, and the beauty was often a superficial facade which seemed to protect us from the reality of the other creatures in god’s creation.

Increasing scientific knowledge did nothing to quell my views on god’s creation. Seeing as my favorite star was eight thousand light years away, knowing that a light year is how far light travels in a year, knowing that my favorite star was at least eight thousand years old – and most likely far, far older – only made this doubt of god’s creation grow. Especially in a world where creationists and fundamentalists, a great part of the United States population (40%, as late), tend to believe the world is six thousand years old. If my favorite star were eight thousand light years away, and the oldest known sources of light were over thirteen billion light years away, what was the rationale for believing that the world were six thousand years old?

Only a book written by bronze age goat herders.

Noah’s ark I viewed as especially unlikely. Knowing the vast amount of species that exist, knowing that there were many more than I could ever know about, one hundred plus year old man and his family were unlikely to collect them all, build a boat the size of the Titanic that could last forty days on the water or hold all of these animals, how likely was this event to have occurred? Not at all, I came to realize very quickly.

So by twelve, the seeds of doubt had been well sewn. Before too long, I was headfirst into scientific research on every major topic I could cover. I saw vast amount of evidence for the science, and with that, less and less for creationism. By thirteen, I was an atheist in every aspect but title. It took two additional years to come out of the closet, but in the six years since (I’m twenty one at present), I have learned much more than I could have dreamed about how the universe works. Much more than my peers, much more than my family. I grew to realize that creationism held one back from reality as it was, and I grew to loathe it more and more as I went. I suppose, though I leave people to themselves, generally, I have become a stern anti-theist. 9/11 and the hysteria surrounding it certainly didn’t help keep me on the so-called ‘righteous’ path, and I wouldn’t have life any other way. There is no amount of ignorance that could satisfy my sheer lust for knowledge, and ever more of it.

While I learned much about willful ignorance from the Creation Museum, I can’t help but wonder how this life, a life of unknowing, is satisfying for anyone who has a great lust for knowledge, information, science, and truth. I cannot look at creationists with a sense of hatred, dislike, or what have you, but I do look at them and their kind with a great feeling of sadness and pity. I pity creationists. They deserve it.

In addition, my whole life I’ve had one key struggle that was in drastic opposition to my faith and the faith of my parents. My whole life, I have been well aware that I didn’t feel like the other boys I knew. That when I looked in the mirror, I was different. That I was wrong. My body was wrong. Some of my greatest early Christianity struggles, going back as far as I can remember, took place as the result of my feelings that I should have been born as the opposite sex.

As a male to female transsexual, I always pondered how I were supposed to be a Christian and live a life directly opposed to the gospels. How was I supposed to live happily as a female if the Bible condemns something such as the simple act of wearing the opposite gender’s clothes? I wouldn’t think it far out in the least that a good bit of my Biblical skepticism came from knowing that the way I felt was condemned, yet I never made a choice, nor asked for anything like what I had received from my earliest memories on. It had always been there, known to me, accepted by me, yet condemned by the religion I was raised into and by the people I had grown to love.

I still struggle with transsexuality, though on the basis of my family’s beliefs being in direct contrast to it. I will not be stopped by the faith of my fathers, but the pain caused by them is indeed very considerable. I hold religion itself in contempt for marginalizing people like me. My growing sympathy with homosexuals didn’t help their case, either. I figured out that if I felt this way naturally, so did the homosexuals, who were so demonized and hated… and that is simply unforgivable.

So why am I an atheist?

Nature. Science. Reality. Skepticism. Transsexualism. Lust for knowledge. A critical mind. No satisfaction in ignorance.

And I wouldn’t have it any other way.

Michael Baizley
United States

I have seen the accounting

The Pharyngula shop is doing OK. However, my goal of reaching Richard Branson levels of obscene wealth isn’t quite here yet — we have only sold 66 Pharyngula t-shirts. That number should be 666. Please increase your materialistic consumption of crass site-labeled merchandise ten-fold, immediately.

That will be all.

Further imperatives to increase consumption quota will follow at a later date.

Techniques to go with the tools

So you read that cool summary of how to build a molecular biology lab for $500. But wait, you don’t know what you’d do with the mobio toys! Here’s how to correct that: go to a workshop.

THE MICHAEL SMITH LABS AND ADVANCED MOLECULAR BIOLOGY LAB PRESENTS OUR MOLECULAR BIOLOGY WORKSHOPS 2012 WINTER/SPRING Session.

ONE WEEK VERSION (5 DAYS) – MOLECULAR TECHNIQUES WORKSHOPS
FEB 13 – 17, 2012 (CAN$1400)
DESCRIPTION: Recently updated: This intense 5 day workshop will focus on a myriad of different techniques used in the molecular manipulation of DNA, RNA and protein, as well as inclusion of exercises in some basic bioinformatics tools. Primarily aimed at researchers who are new to the area, familiar but require a quick updating, or would like more practical bench training.

PHILOSOPHY: Whilst molecular techniques have evolved at a speedy rate over the last few decades, the underlying biochemical principles behind the vast majority of them has actually changed little. This workshop therefore combines opportunities to perform the latest, as well as commonly used older techniques, with particular attention to the chemical nuts and bolts behind them. In all, this allows the researcher to not only gain needed familiarity with the techniques, but also achieve a comfortable theoretical level to allow for both (1) that all important skill of troubleshooting, and (2) the often undervalued skill of judging the utility of “tricks” that aim to speed up, or lower costs of a given methodology.

TECHNIQUES COVERED: Various nucleic acid purification methodologies (silica bead, organic, and/or pI based), restriction digests, ligations, dephosphorylation assays, agarose gel electrophoresis, transformation (including electroporation), PCR, reverse transcriptase assay, real time qPCR, basic bioinformatics, (including blast tools), SDS-PAGE, Western blot analysis, Isoelectric focusing strips, and 2D protein gels.

Full details can be found at http://www.bioteach.ubc.ca/mb-workshops/#molecular

See? You can become a mad scientist for cheap nowadays.

(Also on FtB)