I graduated!

I now have a Bachelor of Science with the Honors curriculum in Biology from Purdue University!

Major 1: Genetic Biology
Major 2: Ecology, Evolution, & Environmental Biology
Minor: Psychology
Honors thesis: Inferring mating habits in banner-tailed kangaroo rats (Dipodomys spectabilis) using DNA extracted from copulatory plugs

Wooooo! A big thank you to my family, friends, and instructors for helping me along the way. I now will sound ten times smarter in any debate because I have some letters after my name ;)

And thankfully our commencement ceremony wasn’t too religious. Purdue has four ceremonies due to the sheer number of students, and mine was the last one. The first three had a Lutheran minister speak, and apparently he enjoyed referencing God a lot and asking people to pray during the “Moment of Reflection.” Our commencement got a Rabbi, who was wonderful – he was funny and completely and utterly secular.

Now, I don’t think a public university should designate a time for religious speakers, as that inherently shows a preference for religion over non-religion. Not to mention, even when they try to be diverse, they never include anything outside of Abrahamic religions – when I went a couple years ago (for the grad of my boyfriend at the time) they still just had a Catholic, a Protestant, a Jew, and a Muslim (no, they didn’t walk into a bar). My big beef is that after the “Moment of Reflection,” the choir sings “Amen” over and over again. Um, yeah, that’s not a moment of reflection…

But anyway, it was nice. Afterward there was a little reception for the College of Science, where my parents got to meet some of my professors. I liked this one interaction with my biology professor from Sophomore year:

Prof: I love meeting parents because I get to see Mendelian genetics in action!
Me: *laughs*
Parents: *awkwardly chuckle because they have no idea what that means*

Then later I got to explain that he was nerdily saying that I looked like both of them, hehe.

I guess I’m officially a scientist now, yaaay!

PS: Oh, and I got recognized by random professors and parents I didn’t know because of Boobquake, hahaha.

No talking about animal sex in academia!

A while ago a paper was published that discussed oral sex in bats. Now, if you’ve ever hung around biologists or evolutionary psychologists for more than five minutes, you know that we tend to be a little obsessed with sex. Seeing papers like this greatly amuses and interests us – I know I was sent this paper by at least 10 different biologists I know.

So what happened to Prof. Dylan Evans of University College Cork surprises me. I’ll just repost his letter so you get the whole story:

Dear Colleagues,

The President of University College Cork, Professor Michael Murphy, has imposed harsh sanctions on me for doing nothing more than showing an article from a peer-reviewed scientific article to a colleague.

The article was about fellatio in fruit bats. You can read it online at http://www.plosone.org/article/info:doi/10.1371/journal.pone.0007595

It was covered extensively in the media, including the Guardian – see http://www.guardian.co.uk/education/2009/nov/10/oral-sex-bats-improbable-research

The colleague to whom I showed the article complained to HR that the article was upsetting. I had been engaged in an ongoing debate with the colleague in question about the relevance of evolutionary biology to human behaviour, and in particular about the dubiousness of many claims for human uniqueness. I showed it the colleague in the context of this discussion, and in the presence of a third person. I also showed the article to over a dozen other colleagues on the same day, none of whom objected.

HR launched a formal investigation. Despite the fact that external investigators concluded that I was not guilty of harassment, Professor Murphy has imposed a two-year period of intensive monitoring and counselling on me, and as a result my application for tenure is likely to be denied.

I am now campaigning to have the sanctions lifted. I would be grateful for your support on this matter. I have created an online petition at:
http://www.ipetitions.com/petition/freedebate/

I’d be grateful if you sign the petition and ask your colleagues to do so. If you also felt like writing directly to the President of UCC, his address is:

Professor Michael Murphy
The President’s Office
University College Cork
Cork
Republic of Ireland.

Your support would be greatly appreciated.

Dylan Evans

If someone gets upset for you bringing up something sexual (that’s relevant) during a biology discussion, something is wrong. Just because us humans like to be puritanical about things doesn’t mean nature follows suit. I’ve blogged before at the diversity of sexual behavior in living organisms – we shouldn’t be ignoring that because “oral sex” sounds gross or sinful. It’s still part of the discussion, whether you like it or not.

I wonder what would have happened if Dr. Evans showed this colleague papers about homosexuality, polygamy, rape, necrophilia, traumatic insemination… I’m betting on fainting and pearl clutching.

(Via Pharyngula)

The Evolution Litmus Test

A couple days ago when I was waiting for my Biomedical Ethics exam to begin, I started chatting with this girl sitting near me. She was in my recitation class, but I didn’t really know anything else about her. Somehow I mentioned I was a biology major, and she brought up the one biology class she took as an Animal Science major: it was my favorite Biology class at Purdue, Evolution of Behavior.

Now, even though one of my research advisors teaches that class, I promise I’m not being biased – every day I left that class absolutely amazed at how interesting and inventive nature was. I’ve always been more of a lab rat and genetics nerd, but this gave me real appreciation for natural history and behavior. We talked about insanely interesting topics like the evolution of echolocation, altruism, dominance regulated ovulation suppression, and electric fish communication. And as a perk, I thought the class was pretty easy; if you just understood basic evolutionary principles and paid attention at all (which was a given, since it was so cool), you’d do fine.

So when this girl brought it up, of course I gushed about how much I loved that class. To which she replied,

“Oh, I don’t believe in evolution. I just took that class to see what the different opinion was like.”

The only thing that kept me from calling her out on the stupidity of her statements (EVOLUTION IS NOT FUCKING OPINION) was the fact that I didn’t want to totally upset myself right before I had to take a difficult exam. But of course, she had to go on,

“It was so hard! I didn’t understand anything he was saying all semester!”

I asked her if she took the required introductory evolution classes before taking this one, and she said no – her Animal Science advisor said the class was easy and she waived the requirements. This made me fume. Evolution of Behavior is a 500-level class meant for upperclassmen and graduate students. We spend about a day reviewing the principles of evolution because it’s assumed you’ve already learned them in the various required classes. So if you stick a creationist in that class with no knowledge of evolution, of course they’re going to be totally confused. And now they can proudly claim “well I took a class on evolution and so I know it’s wrong” just because they didn’t have the skill set to understand the class!

The thing that annoys me the most is that this person is graduating with a degree in Animal Sciences. If you are getting a degree in something biology-related, you should understand and accept evolution. Hell, I know Biology students (mostly molecular or pre-med people) who don’t accept evolution, so it’s not a matter of curriculum*. But to know that we’re giving degrees to people who fail to understand – no, outright deny a basic tenet of biology is shameful.

Would chemistry give degrees to someone who thought the five elements were more accurate than the periodic table? Would physics give degrees to a someone who thought gravity was fairies holding us down to the ground? Would earth and atmospheric sciences give degrees to flat-Earthers? Would astronomy give degrees to people who think the moon is made of cheese?

Maybe with the way American education is set up, you can’t stop someone from graduating based on these things. Maybe they adamantly believe in fanciful superstition, but are smart enough to give the desired (aka correct) answers on exams. How do you hold back someone with crazy beliefs if they got As in all the classes?

And while I hate giving creationists undeserved credentials (“I got a degree in Biology, and I know evolution is false, trust me!”), I guess they can go have jobs where evolution doesn’t matter as much. Go pipette for hours at some company for all I care. But when these people are going on to become teachers or scientists, it’s scary. You need to be able to understand and accept evolution to 1) Teach it to others so we don’t keep perpetuating ignorance, and 2) Come up with plausible hypotheses, do good research, and interpret results correctly.

This is why I think we need an Evolution Litmus Test in these fields. Do not accept people into your school or Masters/PhD program unless they accept evolution. I don’t care how you do it – a written test, an essay question on the application, a simple check box to weed out the honest, asking pointed questions during interviews, sending grad student spies to mingle and get the truth out… But figure out what people deny basic science before you turn them into scientists. A friend shared with me a story about a fellow grad school interviewee at a very prestigious university who was a unabashedly proud young earth creationist around the other prospective students (but not current ones or professors) – do not let this ignorance infiltrate your program.

I know people are going to claim I’m just putting an “atheist requirement” on studying biology, but I am not. There are many many biologists who are religious but still accept evolution. I have friends here at Purdue who go to church weekly, are in religious clubs, and will still laugh at Intelligent Design for it’s anti-science lunacy. This is just a scientific standard. If you don’t believe in a fundamental of the field, you should not be able to claim some sort of expertise in it. It’s as bad as graduating in History with a focus on WWII and believing the Holocaust was a hoax. It proves you do not understand the topic, and it is embarrassing to the school.

But really, is it that outlandish to require people to understand the field you’re hiring them in?

*Note for non-Purdue people: AS is part of the College of Agriculture, and Biology (what I’m in) is part of the College of Science, so we have very different curriculum. Hence why she didn’t have to take those intro Biology courses that teach evolution (though those still fail to educate some bio majors).

Why people won't watch CSI with me

From here:
Because finding a contaminated sample of cells, extracting the DNA, successfully amplifying a clean PCR, genotyping or sequencing it, and editing your perfectly clear and uncontaminated results always takes about ten minutes. And nothing ever fails. Ever. They must pray to the PCR Gods more than I do. Oh, and not to mention they have a genetic database of every human on earth to compare their DNA to. Even if BLAST ever did grow that large, it would take hours, if not days of computational time to find the correct match.

Yeah, now whenever I watch CSI with my dad, he’ll just turn to me and ask, “That’s nothing like how it actually works, is it?” Nope.

And as a side note, you know you’ve been working on your honors thesis too long when a graph jam graph annoys you. The Y axis is horrible, and there are no error bars! I can definitely go from tissue sample to sequence data in 3 days if everything works perfectly, and I’ve also had it take up to two months (stupid low sodium clean up procedure!). …I’m a nerd.

Why people won’t watch CSI with me

From here:
Because finding a contaminated sample of cells, extracting the DNA, successfully amplifying a clean PCR, genotyping or sequencing it, and editing your perfectly clear and uncontaminated results always takes about ten minutes. And nothing ever fails. Ever. They must pray to the PCR Gods more than I do. Oh, and not to mention they have a genetic database of every human on earth to compare their DNA to. Even if BLAST ever did grow that large, it would take hours, if not days of computational time to find the correct match.

Yeah, now whenever I watch CSI with my dad, he’ll just turn to me and ask, “That’s nothing like how it actually works, is it?” Nope.

And as a side note, you know you’ve been working on your honors thesis too long when a graph jam graph annoys you. The Y axis is horrible, and there are no error bars! I can definitely go from tissue sample to sequence data in 3 days if everything works perfectly, and I’ve also had it take up to two months (stupid low sodium clean up procedure!). …I’m a nerd.

Interdisciplinary research (comic)

I love PHD Comics. Because even though I say I read it to prepare me for grad school, it’s already so much like my life. For example:Let’s see…

I work in the Ecological Genetics Laboratory but get paid by Genetics (and previously Howard Hughes). My Advisor is in Forestry and Natural Resources but my other Advisor is in Ecology. Officially, I’m part of Biology in Lilly Hall…even though my office* is in Pfendler Hall. Most of my classes are on molecular & cell biology, yet technically my degree is in Genetics and Ecology, Evolution, & Environmental Biology. So basically, I belong in the Biology Borg Collective.

Okay, I guess that’s not too insane. But seriously, I’ve taken two advanced genetics classes and a tiny seminar class, and that’s good enough for a degree in Genetics. That’s kind of terrifying. Less microbiology, more genetics!

*Office = lab bench space that I have guarded dearly for three years and damnit who keeps moving my pipettemen and tiny tubes and tube opener?! *hoard hoard hoard*

Endangered species condoms

No, not condoms for endangered species – that wouldn’t exactly help their problem. These are condoms with endangered species on them.

Who would be behind such a crazy project? Biologists, of course! The Center for Biological Diversity are passing out these condoms to raise awareness about overpopulation and its effect on the environment.

…Ok, I seriously want these things. There are six to collect: a burying beetle, polar bear, snail darter, spotted owl, jaguar and rock frog. Must…collect…nerdy condoms…

(Via Skepchick)

Happy Darwin Day!

Happy Darwin Day, everyone! This year the Society of Non-Theists had a fairly simple event, since we have so much other stuff going on. We just had our annual Darwin Fish fundraiser selling cool evolution oriented merchandise.
We sold a lot throughout the day, and made about 150 dollars! Woot! Now we can spend even more money on pizza. And the club members rejoice.

Of course, I’m not too surprised that our fundraiser did well. It does well every year, especially since we hold it in the LILY, the biology building.
I mean, can’t you just tell that’s the biology building, with that artwork in the background? The hands of God coming out of clouds and creating the first cells is totally a biologically sound theory…right?

Regardless of artwork that annoys the biologists, it was a good day for evolution. I saw a random person wearing a Happy Birthday Darwin pin, which made me super happy. I also got to briefly teach my honors freshman class about evolution! We’re learning about mutations and selecting bacteria that can survive in certain environments, so it was somewhat relevant. The professor asked if I would explain evolution to them, since I like it so much.

I have to say, I was really impressed. Everyone already understood the basics of the theory without the misconceptions. I specifically wore my Darwin Athletic Club: Survival of the Fittest t-shirt and asked them why it wasn’t really correct, and they got it right: that strength and endurance doesn’t necessarily mean an individual is fit – it’s reproduction that matters. They also asked extra questions about epigenetics and kin selection. I was really impressed for freshmen! The intro biology class has been updated since I last took it, and is a lot more evolution heavy – looks like people are actually understanding it now!

Not sure anything can make Darwin Day better than teaching our future scientists about evolution.