Quoted for truth

From The Seattle 500 Women Scientists:

Despite the popular myth of the lone-wolf genius scientist, science is an inherently social, collaborative endeavor. Intensive scientific training involves close collaboration with a senior advisor. Most scientists can trace their “academic genealogy” through generations linked by formative relationships. Scientific papers typically include many authors who work together to form something greater than the sum of its parts. Conferences and workshops where scientists mingle are petri dishes of new ideas and partnerships—they are nurseries and laboratories for future scientific communities. Scientific progress depends directly on the ability of scientists to discuss, argue, collaborate, and build upon on the knowledge of others.

Yes! I tell my students this: I explain to them that they have to work in teams in lab because that’s the only way they’ll ever succeed in this career.

I don’t know whether I’ve been doing something right, or something wrong

It’s sinking in that I’m never going to be rich. I was just reading about Shane Smith and Vice, and how he built a company that’s nominally worth billions with nothing but chutzpah…oh, and lies and exploitation.

While Vice’s soaring valuation had changed Smith’s life, there was little evidence among its employees that they were working at a company more valuable than the New York Times. Smith had proudly boasted in the past that Vice was “a sweatshop for trustafarians” who could afford to work for little pay, and in 2014, it was still a place where an employee could find herself taking care of a more senior colleague who was wasted after a Vice party and be worried she wouldn’t have enough money in her bank account to give the cabbie cash to clean up any vomit. A senior manager once joked that the company’s hiring strategy had a “22 Rule”: “Hire 22-year-olds, pay them $22,000, and work them 22 hours a day.”

And then I read about Ivanka Trump and Jared Kushner’s barfalicious wealth.

Ivanka Trump and Jared Kushner, the president’s daughter and son-in-law, brought in at least $82 million in outside income while serving as senior White House advisers during 2017, according to financial disclosure forms released Monday.

OK, feeling better now. I’m not rich, but apparently you have to be terrible, horrible, conscienceless scumbags to become rich in America.

Brain in a bucket: or, when hype meets ethics

Dr Nenad Sestan has a technique to recover some functioning neurons from dead brains. He’s been collecting decapitated pig heads from slaughterhouses and hooking them up to perfusion pumps and running an oxygenated saline (plus other secret ingredients) through them, and then doing physiological assays on the brain tissue, finding that significant numbers of the neurons are still viable and show signs of cellular activity.

There was no evidence that the disembodied pig brains regained consciousness. However, in what Sestan termed a “mind-boggling” and “unexpected” result, billions of individual cells in the brains were found to be healthy and capable of normal activity.

This work has not yet been published in a peer-reviewed journal, so take that “billions” number with a grain of salt. Even if accurate, and I don’t think there’s any way he could have accurately gotten a good count, it still means that only a small percentage of the cells in the brain retained any capacity to function. It is mostly dead, and ignoring the Princess Bride reference, mostly dead is completely dead. The integrated whole is non-functional. The pig is not thinking, not dreaming, not awaiting the kiss from its true love to awaken. It is unresponsive. It is an ex-pig.

Sestan now says the organs produce a flat brain wave equivalent to a comatose state, although the tissue itself “looks surprisingly great” and, once it’s dissected, the cells produce normal-seeming patterns.

The lack of wider electrical activity could be irreversible if it is due to damage and cell death. The pigs’ brains were attached to the BrainEx device roughly four hours after the animals were decapitated.

Put that four hours in context. If your brain is deprived of oxygen for four minutes, irreversible damage begins. After about six minutes, you are dead and typically beyond resuscitation. Within that window between the onset of damage and death, the functional network of the brain begins to break down, and victims have an increasing chance of being reduced to a comatose vegetable.

Those pig brains were deprived of all oxygen and nutrients for 240 minutes. “Comatose” is a generous assessment of their state. You’ve no longer got a brain, you’ve got a scattering of individual cells that no longer work together, but haven’t quite gotten the message that they’re supposed to decay, or haven’t yet been chewed up by bacteria or the wash of lytic enzymes released by their definitely dead neighbors.

This is not a surprising result. No one expects that there is an instant of death in which every cell ruptures their membranes and disintegrates into a liquid acellular mass. It takes time for a mass of meat to break down completely. It is a slight surprise that they can salvage useful single cells after hours of breakdown, but only slightly.

Is this a useful observation? Yes. It would be nice to have another source of neurons for laboratory work that doesn’t require maintaining a colony of animals that you have to personally kill to extract the very freshest cells. You can also use this surviving subset to trace functional activity, which is apparently the goal of the research. It’s going to have new problems, though: how do you interpret the cellular activity of a neuron that has been hypoxic for four hours? Is it actually comparable to newly isolated or cultured cells? The Sestan lab has a lot of work ahead of them. It’s also likely to be extendable to animals other than pigs: human brains donated to research might provide a pool of living cells for physiological work.

But realistically, this is more like discovering that you can go down to the local junkyard and find an unbroken passenger side front window for a 1998 Toyota Corolla that you can use to replace the one someone broke on your car, or a replacement starter motor for your Jeep Cherokee. It does not mean that we can expect a zombie car uprising as the whole junkyard starts up and rushes to clog up the nearest freeway.

Unfortunately, it is also priming unrealistic and irrelevant ethical dilemmas.

The one type of research he thinks may call for quick action to set up rules of the road is Sestan’s unpublished brain preservation technique (which the Nature editorial did not discuss). “If people want to keep human brains alive post mortem, that is a more pressing and realistic problem,” says Hyman. “Given that it is possible with a pig brain, there should be guidelines for human tissue.”

It is not a pressing or realistic problem. What is described as a concern is not possible with a pig brain — I have to say it again, those are dead, non-functional, unsalvageable brains, although a tiny fraction of the cells might have some utility for research. Still, it could become a legitimate ethical issue, so I can see where the responsible ethicist will set up guidelines before it becomes a problem.

Imagine a situation where a patient is dying of organ failure, but their brain is still healthy. If we could decapitate them, hook them up within seconds to the pumps and fluids that Sestan pioneers, keeping their brain intact and undamaged and healthy in a nice little vat, should we? Given that there is no known technique for reconnecting such a brain, it might be greater torment than allowing them to die — would you want to spend decades in a sensory deprivation tank, just for the sake of living? That’ll be a fun one for the bioethicists to wrestle with.

But this technique is not currently anywhere close to raising this problem.

What I see as a greater problem is this annoying essentialism. It’s HUMAN, it’s a HUMAN brain, therefore we need to regard it with the same requirement of respect we accord to HUMAN BEINGS. There is a difference between an adjective and a noun. It is human tissue, yes, but it has none of the properties essential to a good definition of a sapient human being (which we don’t have in most people’s heads: they’ll talk about 46 chromosomes, or parentage, or attributes of the human body like having one head and two arms and two legs, which are all pretty much irrelevant to personhood, I would think), so people freak out over human organoids, little blobs of brain tissue around a millimeter across in a dish, or over chimeras, small subpopulations of human cells in an animal host.

As far as I’m concerned, the Sestan experiment has been grossly overhyped, although it has real potential, and the ethical gasps are actually in response to an imaginary situation, rather than anything that has happened yet.


Lest anyone think I said anything the ethicists don’t already know, I should include this bit from one of them:

Hyman…thinks most of the scenarios are exaggerated or unlikely. It’s hardly possible a tiny brain organoid will feel or think anything, he says.

Played like a chump

I have to hand it to David Brin as a soothsayer: Brin predicted what would happen in the ‘negotiations’ between Trump and Kim Jong Un. North Korea would offer a token reduction in some nuclear facilities, which they don’t need anymore, and would ask for a reduction in sanctions and most importantly, a reduction in conventional arms.

For reasons of both economic and personal survival, Kim desperately needs a smaller army.

In contrast, nuclear weapons – once you have them – are cheap to hold, to hide and to maintain.

Kim’s current dilemma has only one solution, then. Keep enough nukes to deter any adventurous notions on our side… and hold onto those artillery tubes threatening Seoul… then entice both South Koreans and Americans to shout hosannahs over a “deal” to slash their own forces below the DMZ. Forces they can easily afford and that pose them zero risk.

Let’s be clear: any conventional draw-down is Kim’s chief aim, his win-win.

So what did this “historic meeting” actually accomplish?

North Korea is shutting down one engine testing site, and they’re going to return some American remains from the Korean War. These are token gestures. Trump did leave the current sanctions in place.

What is North Korea gaining? A reduction in military activity in South Korea.

Trump announced that he will order an end to regular “war games” that the United States conducts with ally South Korea, a reference to annual joint military exercises that are an irritant to North Korea.

Trump called the exercises “very provocative” and “inappropriate” in light of the optimistic opening he sees with North Korea. Ending the exercises would also save money, Trump said.

The United States has conducted such exercises for decades as a symbol of unity with Seoul and previously rejected North Korean complaints as illegitimate. Ending the games would be a significant political benefit for Kim, but Trump insisted he did not give up leverage.

He completely blindsided the South Koreans on that one.

So North Korea got what they wanted out of the meeting, and Trump got nothing of substance. Kim Jong Un also got one other thing: fluffed by America. Trump was silent on human rights abuses, and even said this:

Well, we’ve given him, I don’t wanna talk about it specifically, but we’ve given him, he’s going to be happy. His country does love him. His people, you see the fervor. They have a great fervor. They’re gonna put it together, and I think they’re going to end up with a very strong country, and a country which has people — that they’re so hard working, so industrious.

His people are slaves in a giant cage, who will be executed if they don’t show fervor. Trump has given Kim Jong Un a massive PR victory that he can use to quell any rebelliousness: America says you’re happy. America is going to stop even practicing opposition. America isn’t going to help you.

Isn’t it interesting how Trump can go from snarling at Canada and alienating the democratically elected leaders of allied nations, and then scurry off and express his warm appreciation of tyrants and dictators?

Bill Donohue, ghoul

Oh god. Bill Donohue weighs in on Anthony Bourdain’s suicide.

If Anthony Bourdain had been a religious man, would he have killed himself? Probably not. The celebrity chef was found dead today in his hotel room in Strasbourg, France.

As I have recounted in my book, The Catholic Advantage: How Health, Happiness, and Heaven Await the Faithful, there is an inverse relationship between religiosity and suicide: those who are regular churchgoers have a much lower rate of suicide than atheists like Bourdain.

Nice of him to use the opportunity of the man’s death to plug his book.

You know, though, I think he’s sort of right: if you’re told over and over again from childhood on that suicide, in addition to ending your life and bringing grief to loved ones, will only lead to even greater misery as you’re tortured for eternity, I can see where it might dissuade some potential suicides. So let’s take it as a given that you can reduce the suicide rate by being indoctrinated in the Catholic faith (there’s data!) with the side effect that you are increasing fear and guilt to achieve your end. Would it be worth it?

If you could save Bourdain by erasing part of his character, do you think he would have chosen it? He had the opportunity, after all — his father was Catholic.

Would reducing the suicide rate be worthwhile if, instead, we increased the rate of child rape?

I’ll just leave this here.

The Archdiocese of St. Paul and Minneapolis has reached a $210 million settlement agreement with 450 victims of clergy sexual abuse as part of a bankruptcy reorganization, officials announced Thursday.

At $210,290,724, it is estimated to be the second-largest payout by the Catholic church in the U.S., according to the Associated Press. It comes after nearly four years of bankruptcy proceedings and negotiations.

Before you ask…

The largest clergy abuse related settlement to date was reached in 2007 by the Archdiocese of Los Angeles, which paid 508 victims $660 million.

That’s almost a thousand children in just two cases, raped with the collusion of the Catholic church. Is that a fair price to pay? For anything?

Who wants to do a live chat about abortion on Saturday?

I thought the chat yesterday was productive and fun, and it was really good to share the screen with someone who would bring in new questions, and I’d like to do something along those same lines next weekend. I’m thinking I’d have some similar prepared remarks for the first half hour or so, followed by a free-for-all conversation.

My topic for this next event will be “A developmental biologist’s perspective on abortion”, but don’t you hate it when some dude starts hectoring the wimmin on the right way to think about their bodies? If I’m going to do this, I damn well give equal time to someone who could get or could have gotten pregnant, to give their perspective. I don’t mean someone who thinks abortions are Satan’s t-shirt gun — I’m not setting up a debate — but someone who can complement my abstract view with something more personal.

If you’re interested, email me and we can arrange it.

P.S. If you’ve never had a uterus or ovaries and think you have an informed take on the subject, I’ll consider including you, too — make your case in the email. But I will not have a panel of guys arguing on this subject.

Raining!

We’re in the middle of one of those summer thunderstorms — you know, the constant rumble, a deluge of rain, occasional flashes of lightning arcing against a light gray sky. I did my rounds this morning, going to the gym, tending to fish, getting soaked to the bone despite carrying an umbrella (they are useless when it’s windy), and I passed through the science building atrium, which is roofed with these large skylights that rumble when the rain drums on it, and caught a quick video on my phone. It doesn’t do it justice — I should go in with my good microphone and just capture the sound for an hour or two. It’s very soothing.

Important safety tip: the science atrium is not the place to hang out if there is a tornado alert. Any other time, it’s great, but during a tornado it might just rain shards of glass.

Has anyone ever been inspired by a school administrator?

I’m asking sincerely. I’m sure it happens. I just don’t know of any cases. I can think back and make a long list of teachers who got me excited about diverse topics, but administration is a thankless job, and there isn’t as much opportunity to interact with students in a positive way.

And then, of course, way too many administrators are craven bullies. Like the nameless “officials” who cut Lulabel Seitz’s commencement speech at the instant she criticized the school. It’s at about the 4 minute mark in this video, which also includes Seitz giving the uncensored version.

Here’s what was cut:

“The class of 2018 has demonstrated time and time again that we may be a new generation, but we are not too young to speak up, to dream and to create change, which is why, even when some people on this campus, those same people —” Seitz said before the mic went off. Her speech, then barely audible, continued, “… in which some people defend perpetrators of sexual assault and silence their victims.”

People in the audience began yell, “Let her speak!” School officials did not turn her microphone back on.

Seitz has accused another student of sexual assault, and the school administration closed ranks to silence her. But we can attach a name to at least one of them!

The San Francisco Chronicle reports that the school’s principal, David Stirrat, stands by the decision, saying, “We were trying to make sure our graduation ceremony was appropriate and beautiful.”

How sweet. Are you also as concerned about making sure the sexual assaults on your students are appropriate and beautiful?

David Stirrat, you are why I do not have fond memories of any high school administrators, who were all button-down conservative a-holes who were more interested in providing cover for business and religious leaders in the community, and not at all about helping students.

Morris just became a little more civilized

We now have a coffeeshop that is open on Sundays!

My plans to see Morris become a happier place are advancing. I have a list.

  • Coffeeshop with longer hours open every day

  • A regional airport

  • Henry Kissinger chokes on his own blood and dies

  • A good bagel place

  • A deep water seaport to the Pacific Ocean

  • For the entire Trump family and their cronies to be arrested and convicted for corruption and fraud, and to spend the rest of their lives in jail or in poverty, whichever makes them more miserable

  • World Peace

See? I’m not asking much.